Glyma.11g017200

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Report for Sequence Feature Glyma.11g017200

Feature Type:	gene_model
Chromosome:	Gm11
Start:	1200246
stop:	1204561
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g017200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23860.1	AT	PHD finger protein-related	JGI	N/A	IEA
GO:0004842	GO-mf	ubiquitin-protein ligase activity	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG2752	KOG	Uncharacterized conserved protein, contains N-recognin-type Zn-finger	JGI	N/A	IEA
PTHR13513	Panther	E3 UBIQUITIN-PROTEIN LIGASE UBR7	JGI	N/A	IEA
PTHR13513:SF4	Panther		JGI	N/A	IEA
PF02207	PFAM	Putative zinc finger in N-recognin (UBR box)	JGI	N/A	IEA

Expression Patterns of Glyma.11g017200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g017200 not represented in the dataset	Glyma.11g017200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g017200

Paralog	Evidence	Comments
Glyma.01g225700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g017200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g01960	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g017200

Limit To All Plant Sequences

>Glyma.11g017200.2 sequence-type=transcript locus=Glyma.11g017200 ID=Glyma.11g017200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACACCTCATAAATCACAAAACGCACGCACGTATACTTTGCTCTGCTCCTTACTCCAAAGTGCCCCTCTCTCGCGCTTCGTCTTTCACCACCGTACAATTTTTCCGCAGCTTCAACGCAACCTGATCGAGCAATTCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATAGAACGTTTCGTGAAACTCCCAAACCAGAAGCCGAAGTTTCCAAGTGAAAATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAGTGAGTTTTTGATGTCTTTGCCTTCAAGGACTTGTTAGTAAAAACTTTCAGACTGTTAAGAGTTTATTTGTATTGTCTGATGTTCGAAACTAAAACTCTAAAAGCCTGCATGCTTTATGATATTTATATTACAATGCTCTACTTGTATTAACTTTGACTTACTAAACTCGTTTTGGTTCCTTTGAGTTAATTTGGATATAACATATGGCTATTAGATTCTTAGACTAAAGATTCTTTT

>Glyma.11g017200.3 sequence-type=transcript locus=Glyma.11g017200 ID=Glyma.11g017200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACACCTCATAAATCACAAAACGCACGCACGTATACTTTGCTCTGCTCCTTACTCCAAAGTGCCCCTCTCTCGCGCTTCGTCTTTCACCACCGTACAATTTTTCCGCAGCTTCAACGCAACCTGATCGAGCAATTCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATAGTGGAACGTTTCGTGAAACTCCCAAACCAGAAGCCGAAGTTTCCAAGTGAAAATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAGTGAGTTTTTGATGTCTTTGCCTTCAAGGACTTGTTAGTAAAAACTTTCAGACTGTTAAGAGTTTATTTGTATTGTCTGATGTTCGAAACTAAAACTCTAAAAGCCTGCATGCTTTATGATATTTATATTACAATGCTCTACTTGTATTAACTTTGACTTACTAAACTCGTTTTGGTTCCTTTGAGTTAATTTGGATATAACATATGGCTATTAGATTCTTAGACTAAAGATTCTTTT

Coding sequences of Glyma.11g017200

Limit To All Plant Sequences

>Glyma.11g017200.1 sequence-type=CDS polypeptide=Glyma.11g017200.1.p locus=Glyma.11g017200 ID=Glyma.11g017200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAG

>Glyma.11g017200.2 sequence-type=CDS polypeptide=Glyma.11g017200.2.p locus=Glyma.11g017200 ID=Glyma.11g017200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAG

>Glyma.11g017200.3 sequence-type=CDS polypeptide=Glyma.11g017200.3.p locus=Glyma.11g017200 ID=Glyma.11g017200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACAGCTTGTTCATTGTCTTGCCATGATGGTCATCAGATTGTAGAGCTATGGACAAAAAGAAACTTCAGATGTGATTGTGGGAACTCAAAATTCGGTGAATTCTACTGCAAGATTTTCCCAAATAAAGATGTAGAAAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCATATTGCACATGTGGTCGCCCTTATCCAGATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATATGGGCGGCTGGAAAGCAGCCAGACGCTACTGTCCAAATTAGCAAGGACAAAGGTGTCTTGGAAGACATCCTTTCAACTTGTCGGTCTGAAAAGCCAACTTGTGATACTTCATGTTGTTCTCCTAAAGTTGATGATGTACAAGCTACAGTTGATTCAAAATCTATATCTGATGGGAAGAGTTTGTCTCAGGGAGAAAATTGTAATGGCAGTATGGCTTCAAATCAATGCACAAAAAGCACCGATTTGCATGTTAATTGTCTCCTTAGTGTTAACATCATCACTGTTTCCCCAGTTTTACCTGGTAAACCAATGTTCCTTTCCAAAAATTGGAGACTTGCTCTATGCAAATGCAATAATTGTTTGGAGTTTTACGAGCAGAAGAAGATTGCTTTTCTACTAGACAAGGAAGACTCAATAGCAGAGTATGAGCAAATGGCCAAGCAAAAGAGAGAAGAAAAATTGCAGCAACAAGAGGGTGCTGAGTTAAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAGATGAAAGATGGGCTTCGTGCTTTCCTGGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAACAAGCGTCGCCGTGTACAGTAG

Predicted protein sequences of Glyma.11g017200

Limit To All Plant Sequences

>Glyma.11g017200.1.p sequence-type=predicted peptide transcript=Glyma.11g017200.1 locus=Glyma.11g017200 ID=Glyma.11g017200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGTFDDEAEPAVTIREYLEEVEERELEADLVLGGDDGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFGEFYCKIFPNKDVENVENSYNHNFKGSYCTCGRPYPDPDAEEQVEMIQCCLCEDWFHEEHLGLESSAEIPKDDEGEPMYEEFICKACSEVCFFLKLYPEEIWAAGKQPDATVQISKDKGVLEDILSTCRSEKPTCDTSCCSPKVDDVQATVDSKSISDGKSLSQGENCNGSMASNQCTKSTDLHVNCLLSVNIITVSPVLPGKPMFLSKNWRLALCKCNNCLEFYEQKKIAFLLDKEDSIAEYEQMAKQKREEKLQQQEGAELSFFNKLGHVEKVEILKGIEEMKDGLRAFLESADSSKPITAADVHQFFDDIKNKRRRVQ*

>Glyma.11g017200.2.p sequence-type=predicted peptide transcript=Glyma.11g017200.2 locus=Glyma.11g017200 ID=Glyma.11g017200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGTFDDEAEPAVTIREYLEEVEERELEADLVLGGDDGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFGEFYCKIFPNKDVENVENSYNHNFKGSYCTCGRPYPDPDAEEQVEMIQCCLCEDWFHEEHLGLESSAEIPKDDEGEPMYEEFICKACSEVCFFLKLYPEEIWAAGKQPDATVQISKDKGVLEDILSTCRSEKPTCDTSCCSPKVDDVQATVDSKSISDGKSLSQGENCNGSMASNQCTKSTDLHVNCLLSVNIITVSPVLPGKPMFLSKNWRLALCKCNNCLEFYEQKKIAFLLDKEDSIAEYEQMAKQKREEKLQQQEGAELSFFNKLGHVEKVEILKGIEEMKDGLRAFLESADSSKPITAADVHQFFDDIKNKRRRVQ*

>Glyma.11g017200.3.p sequence-type=predicted peptide transcript=Glyma.11g017200.3 locus=Glyma.11g017200 ID=Glyma.11g017200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGTFDDEAEPAVTIREYLEEVEERELEADLVLGGDDGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFGEFYCKIFPNKDVENVENSYNHNFKGSYCTCGRPYPDPDAEEQVEMIQCCLCEDWFHEEHLGLESSAEIPKDDEGEPMYEEFICKACSEVCFFLKLYPEEIWAAGKQPDATVQISKDKGVLEDILSTCRSEKPTCDTSCCSPKVDDVQATVDSKSISDGKSLSQGENCNGSMASNQCTKSTDLHVNCLLSVNIITVSPVLPGKPMFLSKNWRLALCKCNNCLEFYEQKKIAFLLDKEDSIAEYEQMAKQKREEKLQQQEGAELSFFNKLGHVEKVEILKGIEEMKDGLRAFLESADSSKPITAADVHQFFDDIKNKRRRVQ*

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