SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17020.1 | AT | exportin 1A | JGI | N/A | IEA |
| GO:0000055 | GO-bp | ribosomal large subunit export from nucleus | EnsemblGenomes | N/A | IEA |
| GO:0000056 | GO-bp | ribosomal small subunit export from nucleus | EnsemblGenomes | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | JGI | N/A | IEA |
| GO:0046825 | GO-bp | regulation of protein export from nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005049 | GO-mf | nuclear export signal receptor activity | EnsemblGenomes | N/A | IEA |
| GO:0005488 | GO-mf | binding | EnsemblGenomes | N/A | IEA |
| GO:0008536 | GO-mf | Ran GTPase binding | EnsemblGenomes | N/A | IEA |
| GO:0008536 | GO-mf | Ran GTPase binding | JGI | N/A | IEA |
| KOG2020 | KOG | Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) | JGI | N/A | IEA |
| PTHR11223 | Panther | EXPORTIN 1/5 | JGI | N/A | IEA |
| PTHR11223:SF2 | Panther | EXPORTIN-1 | JGI | N/A | IEA |
| PF03810 | PFAM | Importin-beta N-terminal domain | JGI | N/A | IEA |
| PF08389 | PFAM | Exportin 1-like protein | JGI | N/A | IEA |
| PF08767 | PFAM | CRM1 C terminal | JGI | N/A | IEA |
|
Glyma.11g011700 not represented in the dataset |
Glyma.11g011700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g228900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g01370 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g011700.1 sequence-type=CDS polypeptide=Glyma.11g011700.1.p locus=Glyma.11g011700 ID=Glyma.11g011700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCGCCGAGAAGCTCAGAGATTTGAGCCAACCCATTGATGTGCCTTTACTCGATGCCACTGTCGCTGCCTTCTATGGCACCGGATCCAAGGAACAGAGAACTGCTGCCGATCAGATTTTGCGCGATTTGAAAAATAATCCTGACACGTGGCTTCAAGTCATGCATATTTTGCAGAACACTCAAAGCCTAAATACCAAGTTCTTTGCCTTGCAGGTTCTAGAAGGTGTAATTAAATACAGATGGAATGCATTACCTGTTGACCAGCGAGATGGAATGAAAAATTTCATCTCTGATGTTATTGTACAGCTTTCTGGCAATGAGGCCTCATTTCGAACAGATCGGTTGTATGTCAACAAACTCAATATTATATTAGTTCAGATTTTGAAGCATGAATGGCCAGTAAGATGGAGAAGCTTCATTCCTGACCTTGTTTCAGCGGCTAAAACTAGTGAAACAATTTGTGAGAATTGTATGGCAATATTGAAGCTCTTGAGTGAAGAGGTTTTTGATTTTTCAAGAGGAGAGATGACTCAGCAGAAGATAAAAGAGCTTAAACACTCATTGAATAGTGAATTTCAGCTTGTTCATGAGTTGTGCTTATATGTGCTATCAGTGTCCCAACGGACTGAGCTCATATGTGCAACACTGTCTACATTGCATGCCTTCCTATCATGGATTCCTTTGGGCTATATATTTGAATCACCATTGCTCGAGACACTGCTAAAATTTTTCCCAATTCCTGCATATCGGAACCTGACTTTGCAATGTTTAACTGAGGTGGCAGCACTTCAATTTGGAAATTACTATGATGCCCATATTAAGATGTATAATATATTCATGGGTCAGTTACAGACCATACTTCCGCCCACTACTAATATACCTGAGGCATATTCACATGGTTCAAGTGAGGAACAAGCATTTATACAGAATTTGGCACTGTTCTTCACCTCATTTTACAAGGTTCACATTCGAATTCTGGAGTCCACTCAAGAGAATATATCTGCTTTGCTATTGGGTCTTGAATATCTTATTAATATCTCATATGTGGATGATACTGAGGTTTTTAAGGTCTGTCTGGACTACTGGAATGTCTTGGTTTCAGAACTGTTTGAGCCACAACGTAGTTTGGAGAACCCTGCAGCAGCAAATATGATAGGACTTCAGGTGCCCGGTATGATTGATGGCATTGGTTCACAGCTTCTTCAGCGCCGACAGCTTTATGCCAGTCCCATGTCAAAGTTGAGAATGCTTATGATCTGTCGTATGGCTAAACCAGAAGAGGTTCTCATAGTTGAAGATGAAAATGGTAATATAGTTCGTGAAACAATGAAAGACAATGATGTTCTTGTTCAATACAAGATTATGAGGGAGACTCTTATTTACTTGTCACATCTTGACCATGATGATACTGAAAAGCAGATGCTGAGAAAGTTAAGTAAACAACTTAGTGGTGAGGACTGGACATGGAACAATTTGAACACACTATGCTGGGCTATAGGATCTATATCTGGTTCCATGGTGGAAGAACAGGAAAATAGATTTTTGGTTATGGTGATTCGTGATTTATTAAATCTATGTGAAATCACAAAGGGAAAAGATAACAAAGCTGTTATTGCAAGTAATATCATGTATGTTGTGGGGCAGTATCCCCGGTTTTTAAGAGCTCATTGGAAGTTTCTAAAAACTGTTGTGAACAAATTGTTTGAGTTTATGCATGAGTCACATCCTGGGGTTCAGGATATGGCCTGCGACACATTTCTGAAAATAGTCCAGAAGTGCAAGCGTAAATTTGTAATCACCCAGGTTGGAGAAAATGAGCCATTTGTTTCTGAACTTCTATCTGGCCTTCCAAATACAATTGCTGATCTTGAACCCCATCAAATACACACGTTCTATGAATCTGTTGGTAACATGATTCAAGCAGAGTCTGATGCCCAGAAGAGAGATGAATATCTTCAAAAGTTGATGGTGCTCCCAAACCAGAGATGGATGGAAATTATAGGGAAGGCACATCAAAATGCTGATTTTCTGAAGGATCAAGATGTAATCCGAAATGTGCTTAATATATTGCAGACGAATACGAGTGTTGCATCATCTTTAGGAACATATTTCCTGCCACAAATCACATTGATCTTTTTGGACATGTTGAATGTGTACAGAATGTATAGTGAGCTTATATCAAAAAGTATTGCAGAAGGGGGACCTTTTGCATCTAGAACATCCTATGTGAAACTTCTACGTTCGGTTAAGAGAGAAACACTTAAACTAGTTGAGACATTCTTGGACAAGGCTGAAGATCAACCACAAATTGGAAAACAATTTGTGCCACCAATGATGGATCCTGTTCTAGGAGATTATGCCAGGAATGTGCCTGATGCGAGGGAATCAGAGGTTTTGTCACTTTTTGCCACAATTGTAAACAAATATAAAGCTGCCATGGTTGAAGATGTCCCACAAATATTTGAAGCTGTATTCCAGTGTACACTGGAGATGATTACAAAAAATTTTGAAGATTATCCAGAGCATCGGCTAAAGTTCTTCTCTTTACTGCGTGCTATAGCTACTCATTGTTTCCCTGCTTTGATCTGCTTGTCAAGTCAGCAACTGAAGCTTGTTATGGATTCAATAATATGGGCGTTTCGGCATACAGAAAGGAATATTGCTGAAACTGGGCTGAACCTGTTGTTGGAGATGTTGAAGAAGTTTCAGGCATCAGAGTTCTGTAATCAGTTTTATCGAACATACTTTTTGACAATTGAGCAAGAGATATTTGCTGTTCTGACGGACACTTTTCATAAGCCTGGGTTCAAATTTCATGTCTTGGTGCTTCAACATTTGTTCTGTCTGGCAGAAACTGGTGCCCTAACCGAGCCTCTTTGGGATGCTGCTACAAATCCGTATCCATACCCAAGTAATGCAGCTTTTGTACGCGAGTTTACTATAAACCTTTTAAGCACTTCATTTCCCAACATGACTGCTTCCGAGGTTACTCAATTTGTTAATGGACTTTTGGAGTCCACAAATGACCTCCCCACATTTAAAACTCATATACGAGATTTTCTTGTACAGTCCAAAGAATTTTCAGCTCAGGATAACAAAGATCTTTATGCTGAAGAGGCTGCAGCTCAGAGAGAGAGGGAAAGACAAAGAATGCTTTCTATTCCAGGACTTGTTGCCCCGAGCGAGTTGCAAGATGAAATGGTTGACTCATAG
>Glyma.11g011700.1.p sequence-type=predicted peptide transcript=Glyma.11g011700.1 locus=Glyma.11g011700 ID=Glyma.11g011700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLKNNPDTWLQVMHILQNTQSLNTKFFALQVLEGVIKYRWNALPVDQRDGMKNFISDVIVQLSGNEASFRTDRLYVNKLNIILVQILKHEWPVRWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKHSLNSEFQLVHELCLYVLSVSQRTELICATLSTLHAFLSWIPLGYIFESPLLETLLKFFPIPAYRNLTLQCLTEVAALQFGNYYDAHIKMYNIFMGQLQTILPPTTNIPEAYSHGSSEEQAFIQNLALFFTSFYKVHIRILESTQENISALLLGLEYLINISYVDDTEVFKVCLDYWNVLVSELFEPQRSLENPAAANMIGLQVPGMIDGIGSQLLQRRQLYASPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHDDTEKQMLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMVEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHESHPGVQDMACDTFLKIVQKCKRKFVITQVGENEPFVSELLSGLPNTIADLEPHQIHTFYESVGNMIQAESDAQKRDEYLQKLMVLPNQRWMEIIGKAHQNADFLKDQDVIRNVLNILQTNTSVASSLGTYFLPQITLIFLDMLNVYRMYSELISKSIAEGGPFASRTSYVKLLRSVKRETLKLVETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIVNKYKAAMVEDVPQIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKKFQASEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKFHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVREFTINLLSTSFPNMTASEVTQFVNGLLESTNDLPTFKTHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLVAPSELQDEMVDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
