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Report for Sequence Feature Glyma.11g010500

Feature Type:gene_model
Chromosome:Gm11
Start:737013
stop:741142
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g010500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65060.1AT 4-coumarate:CoA ligase 3 JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
KOG1176 KOG Acyl-CoA synthetase JGI N/AIEA
PTHR24096Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24096:SF43Panther JGI N/AIEA
PF00501PFAM AMP-binding enzyme JGI N/AIEA
PWY-1121SoyCyc9 suberin monomers biosynthesis Plant Metabolic Network ISS
PWY-361SoyCyc9 phenylpropanoid biosynthesis Plant Metabolic Network ISS
PWY-5754SoyCyc9 4-hydroxybenzoate biosynthesis I (eukaryotes) Plant Metabolic Network ISS
PWY-6320SoyCyc9 phaselate biosynthesis Plant Metabolic Network ISS
PWY-6982SoyCyc9 umbelliferone biosynthesis Plant Metabolic Network ISS
PWY1F-FLAVSYNSoyCyc9 flavonoid biosynthesis Plant Metabolic Network ISS
GN7V-44532SoyCyc9-rxn trans-feruloyl-CoA synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.11g010500
LocusGene SymbolProtein Name
4CL3 4-coumarate:coenzyme A ligase gene 3

Expression Patterns of Glyma.11g010500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g010500
ParalogEvidenceComments
Glyma.01g232400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g010500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g01240 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g010500
>Glyma.11g010500.1 sequence-type=CDS polypeptide=Glyma.11g010500.1.p locus=Glyma.11g010500 ID=Glyma.11g010500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAACGGTAGCTGCTTCTCTTGATGCCAAAGAGGTGTCTACCTCCAAAACTGACCAAAACCAAGTGTGTGACTGTGATCCCCAAACTAGCCATGTCTTCAAATCAAAATTACCAGATATCCCAATCTCCAACCACCTCCCTCTCCACGCTTACTGCTTTCAGAAACTATCCCAATTCTCCGACCGCCCATGCCTCATCGTCGGACCCGCCGCCAAAACCTACACCTACTCCGAGACACACCTCATTTCACGCAAGATTGCCGCCGGATTGTCCAACCTCGGAATCCGCAAGGGCGACGTGGTCATGATCCTTCTCCAGAACTCCGCCGAGTTCGTCTTCTCCTTCCTCGCTGCCTCCATGATCGGCGCCGTCGCCACCACAGCCAATCCGTTCTACACCGCCGCGGAGATCTTCAAGCAGTTTACCGTCTCCAAGACGAAGCTGATCATAACGCAGGCAATGTACGTGGACAAGCTTCGCAACCACGACGACGGCGCGAAGCTCGGCGAGGACTTCAAGGTTGTGACCGTCGACGACCCGCCGGAAAATTGCCTCCACTTCTCGGTGCTCTCGGAGGCGAACGAGAGCGACGCGCCGGAGGTTGATATCCAACCCGACGACGCGGTGGCGATGCCGTTCTCTTCCGGCACGACGGGTTTACCTAAAGGAGTGGTTCTCACGCACAAGAGTTTAACAACCAGTGTGGCGCAACAAGTTGACGGAGAGAACCCTAACCTCTACCTCACCACCGAGGACGTGCTCCTATGCGTGCTTCCGTTGTTTCACATATTCTCCCTCAACAGTGTGCTTTTGTGCGCGCTTAGGGCCGGGAGTGCGGTTTTGTTGATGCAGAAGTTCGAGATTGGGACGCTGTTGGAGCTCATACAGCGGCACCGCGTGTCGGTGGCGATGGTGGTGCCGCCGCTGGTGCTGGCGTTGGCGAAGAATCCGATGGTGGCGGATTTTGACCTGAGTTCAATACGGTTAGTGCTGTCGGGAGCTGCTCCCTTGGGGAAGGAGCTCGTGGAAGCTCTCCGGAACAGGGTGCCTCAAGCCGTTTTGGGACAGTCGTATATTTTGGATCAAGTGATCCGGAGCATATGCGTTTTTTTTTTTCATTTTTATTTCATTCCCCTTTGTTTGCAACTTGAGGTGGTTAAACCTTTCCCAGTACGATATCTGAACGATGAGAAAGCGACAGCATTGACCATAGATTCAGAGGGTTGGCTTCACACCGGTGATGTTGGCTATGTAGATGAAGATGATGAAATTTTCATTGTTGACAGGGTGAAAGAACTCATCAAATATAAAGGCTTCCAGGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAGACGCAGCTGTAGTCCCACAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTCGTTGTGAGATCAAACGGCTTTGATCTAACTGAAGAGGCTGTAAAAGAGTTTATAGCTAAACAGGTAGTGTTTTACAAAAGACTGCACAAAGTTTATTTTGTACATGCTATTCCCAAGTCTCCATCAGGAAAGATATTAAGGAAAGACCTCAGAGCAAAGCTAGAAACCGCCGCCACTCAGACGCCTTAA
Predicted protein sequences of Glyma.11g010500
>Glyma.11g010500.1.p sequence-type=predicted peptide transcript=Glyma.11g010500.1 locus=Glyma.11g010500 ID=Glyma.11g010500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTVAASLDAKEVSTSKTDQNQVCDCDPQTSHVFKSKLPDIPISNHLPLHAYCFQKLSQFSDRPCLIVGPAAKTYTYSETHLISRKIAAGLSNLGIRKGDVVMILLQNSAEFVFSFLAASMIGAVATTANPFYTAAEIFKQFTVSKTKLIITQAMYVDKLRNHDDGAKLGEDFKVVTVDDPPENCLHFSVLSEANESDAPEVDIQPDDAVAMPFSSGTTGLPKGVVLTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELVEALRNRVPQAVLGQSYILDQVIRSICVFFFHFYFIPLCLQLEVVKPFPVRYLNDEKATALTIDSEGWLHTGDVGYVDEDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLETAATQTP*






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