SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38050.1 | AT | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | JGI | N/A | IEA |
| GO:0008202 | GO-bp | steroid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016132 | GO-bp | brassinosteroid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0003865 | GO-mf | 3-oxo-5-alpha-steroid 4-dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016627 | GO-mf | oxidoreductase activity, acting on the CH-CH group of donors | EnsemblGenomes | N/A | IEA |
| GO:0016627 | GO-mf | oxidoreductase activity, acting on the CH-CH group of donors | JGI | N/A | IEA |
| KOG1638 | KOG | Steroid reductase | JGI | N/A | IEA |
| PTHR10556 | Panther | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE | JGI | N/A | IEA |
| PTHR10556:SF2 | Panther | STEROID 5-ALPHA-REDUCTASE DET2 | JGI | N/A | IEA |
| PF02544 | PFAM | 3-oxo-5-alpha-steroid 4-dehydrogenase | JGI | N/A | IEA |
| PWY-2582 | SoyCyc9 | brassinosteroid biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-6544 | SoyCyc9 | superpathway of C28 brassinosteroid biosynthesis | Plant Metabolic Network | ISS | |
| PWY-699 | SoyCyc9 | brassinosteroid biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-57574 | SoyCyc9-rxn | campest-4-en-3-one,NADPH:steroid 5α-reductase | Plant Metabolic Network | ISS |
|
Glyma.11g010000 not represented in the dataset |
Glyma.11g010000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g01210 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g010000.1 sequence-type=CDS polypeptide=Glyma.11g010000.1.p locus=Glyma.11g010000 ID=Glyma.11g010000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATCCCAGAACACTACTCCGACTCATCTCTCTTCCACCGCTCCCTCCTTACCCTCTTCCTAATCGCACCCCCCACCTTCCTCTCCCTCACCTTCCTCCAGGCCCCCTACGGCAAGCACCACAGGCCCGGCTGGGGGCCCAACCTCCCTCCCCCCTTAGCCTGGCTCTTCATGGAAAGCCCAACCCTCTGGCTCACCCTCCTCCTCTTCCCACTGGGCCTCCACTCCCACAACCCCAAAGCCCAAGCCCTCATCACCCCCTTCCTAATCCACTACTTCAACCGCACCATCCTCTACCCTCTCCACCTCCTCCTCACTCCTTCAAAGAAAACCCCAACGGGCTTCCCCCTCGGCGTAGCCCTAATGGCCTTCGCCTTCAACGTTCTCAATTCCTACCTCCAGGCCCGAACGGTCTCTCACTACATCAATCACTATGATGACTCGGGTTTTTTCTGGTTCCGGTTTTTGTGTGGGCTTTTGGTGTTTTTATTGGGGATGGGGATTAATGTATGGGCTGATAGGGTTTTGTTGCGGCTCAAGAGCGAGGGGAAGGGCTACGTGGTGCCGCGCGGTGGGTTGTTCGAGCTCGTGGCGTGTCCGAATTACTTTGGGGAGATTGTCGAGTGGCTGGGCTGGGCCGTGATGACTTGGTCATGGGCCGGGCTGGGCTTTTTTGTTTACACTTTTGCTAATTTGGGTCCAAGGGCCCGGGCCAACCGGAGGTGGTATTTGGAGAAGTTTGGGGAGGATTATCCCAAGGAGAGGAAGGCTGTTATTCCTTACTTGTATTGA
>Glyma.11g010000.1.p sequence-type=predicted peptide transcript=Glyma.11g010000.1 locus=Glyma.11g010000 ID=Glyma.11g010000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MIPEHYSDSSLFHRSLLTLFLIAPPTFLSLTFLQAPYGKHHRPGWGPNLPPPLAWLFMESPTLWLTLLLFPLGLHSHNPKAQALITPFLIHYFNRTILYPLHLLLTPSKKTPTGFPLGVALMAFAFNVLNSYLQARTVSHYINHYDDSGFFWFRFLCGLLVFLLGMGINVWADRVLLRLKSEGKGYVVPRGGLFELVACPNYFGEIVEWLGWAVMTWSWAGLGFFVYTFANLGPRARANRRWYLEKFGEDYPKERKAVIPYLY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
