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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49530.1 | AT | SIN-like family protein | JGI | N/A | IEA |
| GO:0006351 | GO-bp | transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006351 | GO-bp | transcription, DNA-templated | JGI | N/A | IEA |
| GO:0006383 | GO-bp | transcription by RNA polymerase III | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | JGI | N/A | IEA |
| GO:0005666 | GO-cc | DNA-directed RNA polymerase III complex | EnsemblGenomes | N/A | IEA |
| GO:0001056 | GO-mf | RNA polymerase III activity | EnsemblGenomes | N/A | IEA |
| GO:0003899 | GO-mf | DNA-directed 5'-3' RNA polymerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003899 | GO-mf | DNA-directed RNA polymerase activity | JGI | N/A | IEA |
| KOG2354 | KOG | RNA Polymerase C (III) 37 kDa subunit | JGI | N/A | IEA |
| PTHR12069 | Panther | DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE (RNA POLYMERASE III SUBUNIT 5) | JGI | N/A | IEA |
| PF04801 | PFAM | Sin-like protein conserved region | JGI | N/A | IEA |
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Glyma.11g009900 not represented in the dataset |
Glyma.11g009900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g01200 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g009900.1 sequence-type=CDS polypeptide=Glyma.11g009900.1.p locus=Glyma.11g009900 ID=Glyma.11g009900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACTTTGACGACTTAGAAGAAGCGCCGATAAAGGCCACGTCTCGAGTCTCCAAGTTCGCGCCAAAATCATCAAAGCTCAAACCTAAACCAAAATCAGAACCTGCCCCCCCCAAACCTGAACCCCAACCACCCATCTCCAAACCAGAGCCTCAGGAATTCGTTGCAGCAACTGTCAAAAAGAATGAAGATGATGGCGTCGAAACAGTGCCACCAACTCATACGAAACCCGAACTCGACGCCACTGTCAAAATGGAGGAGGCCGAAGACGAACCAGAATCAGTTCGAGACGATCCCATAGACGAAGATATCCCTGAAGAAGACACAGTTGTGCGCGAAATTGATGTCTTCTTCTCTCCTTCTGTCGATGCCCAGACTCAGCTATACGTCTTTCAGTATCCCTTGAGACCTTCTTGGCGACCGTACGATTTGGATGAACAATGCGAAGAGGTAAGGTTGAAGACTAAAACTTCAGAAGTGGAGATTGATTTATCCATTGATCTTGACTCGGACCATATTGACAAAGAGTTTGCCACCAAATACAACATCACAAAGCAGACTTTATCAACTACGTGGAAGCCATCTCATGCAAATGGATGTGCTGTTGGGCTTCTTATGGGTGATAAGTTACACCTGCATCCAGTTCATGCAGTTGTGCAGCTCCGACCAACATTACAACATCTTAATTCTGGTGGTTCAAAACGGAAGAACGCTGCCTCCACTGGAGCAAATGCTACTGTCAAAATTGAGGGCTCAAATGAAGAGAAGTCTGTTGCTACATCAAAGAAGCAGAATAAGCAGACAGGACCTTCTATTATTGAGCAAAAGAGTGATGGTGATGAGTGCTGGGTTCCTCTAAAGTACCATAGCTGCAAGAGTGATATATCCTCTAGATATTTGCAGCAAATGGTGACACAAGAAAGTTCTCCTATAAACTTCACAATGAGAGCGTATGATTATGTTACTGCACTGTGTCCTGGTGGGAGCAGCAACAATTTACCAAAAGGTCTTTCTAAAAGGTATCTTCTATCATTGCCCGTGGAAGAGCGTCTTAAGAAAATGCTTGAGGATCGTCCACTTCATCGTTTCAGTGCTATTAAGCACTTTGCTCCAGAATATTCCGAGAATGAACTTCTAGGATTCCTGCAGCAGCATGCAATATTGGTGTGGGGACTATGGACTGCAAAAAGTTCATTGCTATATCCTGATGGTGGTGTGGAAACTTTGGCCAGAGATTATTCCCTACTATTGTTTAGCAAGAGTTTGAAAGTTCAGTTTTCTGATGTGAGTATTCGAGGAGGTGAACTTGTTAATCGTGTGAGAAACTGCCTGAAGATATTTGGCGTGGAAAGAAATGATCTTGATAAATCTACTGGAAAACCAAATCCTTACTGGAAGTTCAGAGAGCTTCCTGACGAGTCATTCAAAAAACTCTATCCAGATATTGTTGAAAAACAGGAAGAACTTTTCAAAGGTTTGGAAAAACAGTTATCTGGTTTTTCTTCGAATGTTGGAAAACGTAAAATTGGTAAAAATGCTGTAGCAAACCAAGGTGTGAACACTGAGGTTCATAAATCAGAAAGTTCAGATCAACGGGTAACAAGTCTGGGCAGAGTGCCTCCTGCGAAAATGACCATGTCAAATGAAACCCGACATGCTCTGCCAATTGCCCTGAAGAAACTTTTTCAGACTCACAAAGTTTGCAGCTTCAAATTGATATGCGAAGGATTGCGCGAAATGGCAGTTTCCAAAGCTATGCTTTCAAAGGGAGATTCTAAAATGGCTGTGGATGCAGCTCACAGTCTTGATGGTCCCCATAATGAGTTGATGGCTGTCATAAGTGAAGTTGCATGCGAAATCAATGGTTCTTATGTGCTGAAGTCATCACCCGATGATCCATTCAGGGATGTTGTAATTGATATGCTTTGTGGAAGTGGACCCAATGCCAAGCTGAAGAAGGCTGAGATACTTGAAGCTGCCAGAAGAAAACTCGGTAGGGAGGTCGCTAGCAATGAATATACCAAGGTCATGAGCGAGTTATGTGTGTCAAAAGGTTCTGTTTGGGTCTTGAAAAGCGGTGATGGAAGTAAGTAA
>Glyma.11g009900.1.p sequence-type=predicted peptide transcript=Glyma.11g009900.1 locus=Glyma.11g009900 ID=Glyma.11g009900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDFDDLEEAPIKATSRVSKFAPKSSKLKPKPKSEPAPPKPEPQPPISKPEPQEFVAATVKKNEDDGVETVPPTHTKPELDATVKMEEAEDEPESVRDDPIDEDIPEEDTVVREIDVFFSPSVDAQTQLYVFQYPLRPSWRPYDLDEQCEEVRLKTKTSEVEIDLSIDLDSDHIDKEFATKYNITKQTLSTTWKPSHANGCAVGLLMGDKLHLHPVHAVVQLRPTLQHLNSGGSKRKNAASTGANATVKIEGSNEEKSVATSKKQNKQTGPSIIEQKSDGDECWVPLKYHSCKSDISSRYLQQMVTQESSPINFTMRAYDYVTALCPGGSSNNLPKGLSKRYLLSLPVEERLKKMLEDRPLHRFSAIKHFAPEYSENELLGFLQQHAILVWGLWTAKSSLLYPDGGVETLARDYSLLLFSKSLKVQFSDVSIRGGELVNRVRNCLKIFGVERNDLDKSTGKPNPYWKFRELPDESFKKLYPDIVEKQEELFKGLEKQLSGFSSNVGKRKIGKNAVANQGVNTEVHKSESSDQRVTSLGRVPPAKMTMSNETRHALPIALKKLFQTHKVCSFKLICEGLREMAVSKAMLSKGDSKMAVDAAHSLDGPHNELMAVISEVACEINGSYVLKSSPDDPFRDVVIDMLCGSGPNAKLKKAEILEAARRKLGREVASNEYTKVMSELCVSKGSVWVLKSGDGSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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