Glyma.11g004500

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Report for Sequence Feature Glyma.11g004500

Feature Type:	gene_model
Chromosome:	Gm11
Start:	331736
stop:	339290
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g004500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G19600.1	AT	Cyclin family protein	JGI	N/A	IEA
GO:0045737	GO-bp	positive regulation of cyclin-dependent protein serine/threonine kinase activity	EnsemblGenomes	N/A	IEA
GO:0045944	GO-bp	positive regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:1901409	GO-bp	positive regulation of phosphorylation of RNA polymerase II C-terminal domain	EnsemblGenomes	N/A	IEA
GO:0000307	GO-cc	cyclin-dependent protein kinase holoenzyme complex	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0016538	GO-mf	cyclin-dependent protein serine/threonine kinase regulator activity	EnsemblGenomes	N/A	IEA
KOG0834	KOG	CDK9 kinase-activating protein cyclin T	JGI	N/A	IEA
PTHR10026	Panther	CYCLIN	JGI	N/A	IEA
PTHR10026:SF10	Panther		JGI	N/A	IEA
PF00134	PFAM	Cyclin, N-terminal domain	JGI	N/A	IEA

Expression Patterns of Glyma.11g004500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g004500 not represented in the dataset	Glyma.11g004500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.11g004500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g00680	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g004500

Limit To All Plant Sequences

>Glyma.11g004500.2 sequence-type=transcript locus=Glyma.11g004500 ID=Glyma.11g004500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTATCTTTGGTCAGTTTGGTGTTGAACATCTATTTTAAGATAGTTGTGCATGCGAACTGATAACCAAAATCACCCTATATATATAATCACATGGAATAGATCGAGTTGTTATAAGAAGTTGTGTTCCTGGACGATGTTATTACTATTGTTTCTCAATTTTGAAATTAACGGAGGCTAAAGATGTGAATAGTGCTGATTAAAATCCTGGTTGTTATTTTTTTCATGTACGGCGCGGATGGGTAGGCCAATAATAGAACTGGTTTTGAAATCATGGGTGCAGATTTTCGTCAATGATGATTACTGAACAAACAATGAGTTTGGTAGCATTGAGTGGTAATTAAAATTTGCCTTCTCCGGCAGAAACCAGATTGTTGGTTTCTTTTTCTTGGTGTTGGACCCAGTTGCTTGTCAGATAATTTGGATCGAATCTCAATTCAACGGAATGGGGCATATGCATTCACAGCAGGATTCGTGGCATTACTGCAGGTGGGGTGCATGGCTACTATGCTTTGTTTACAAGCTGCCATTGTTGTTGATCTTCAAATTTCAAATCTTCGCAACGCAAGGCAAGGCTGTTCTTTCTTCTTTGTTACAACTCTAATTTTCCATTCCAATTGCAATCTCTAAACGTTGATTTTATAATAAATTTGCTCCTCTGCAATCAGGAATTATGTCTTTTGGATGGAATTTGCAAGCACCCGGACATGATTTACATGGTGTTTATTGGTCCACCTGTGATGGAAACAACTTCAACAATGGCAACCGGAAACGAAGCAGGATCAGCTATTATCATGGGAATTCTAACATTCATAATAATTACTGGGCAGAACACGGTGTCTATTCTAATGTTTACCACTTTGATTATGGTAATCATTTTCAGTGTGATGCAGACCCGTTATCTTTGAAAAGGAGAAAACATTCATCTCCTATTTGTGAAAACAACCAGAAATACTATCTTCCATCTACTGTCCAAGGCAATATCCCTTCATCTGTTAACTTCCAAGCATCTCCCACAAGATCCAATGTTGATACCTCTGTATCACCTATCTGTAAGCTTGATTGTTCTATATTTGAAGATAAAGAGCTGGTGTTTATGTCAAGGGATGAGATTGATAGATGTTCTCCATCAAGAAAAGATGGTATTGATGTACTTCGTGAGAGACACTTGCGCTACTCTTACTGTGCCTTCCTTCAAAATCTTGGGATGTGGCTCAACTTGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTTTTGATTGCTACTGCTGCCCTTTTTCTTGTTGGAAAGTCAGAGGAAACACCGTGTCCTTTGAATAATGTGTTGCAAGCATCCAGTGAAATCTTACATGAACAAGATTTTACTTTGCTGTCCTATCTGCTTCCTGTTGGTTGGTTTGAAAAGTATCATGATCGAGTGCTTGAGGCAGAGCTGTTGTTGCTTACTACTCTAAATTTTGAACTCAATGTGGAGCATCCTTATACATCTCTTACATCTGTCCTTAACAAATTAGACCCATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGATCAGCAAAGGTGATAGAGGATTTAGTGAGTTAATCTGTAGTGCCGAATAAGATGCATTCATCACAAGCATTCCGATTCGCATATTAGCAAGGCTGTCCAGATCAAAATGTAGAGCAGAAGATGTTGCATTGGCATTAGCTTTGAAAGATTCAATTGTTTGCAACGTGCAGCACCCCATGTATGCTTTCTGATTTTAATTACATGGTTTTATGGAGTTTATAGCCCCCACAACATATTTGGGCCTGGAAATCTGAAAAATTCTCTAGACGAGTATAAGAAAATGCTATATTTTCGTACTATATCTGCAATTGTCCAGAGATTCTTGAATAGTATTCTTCCTGAGTAGCAGCTTTTGTTTTTGGCTTCAGAGCTCTCTATGGCTTCAGTATAAACCACATCATATTGCTGCTGGAGCTGCATATCTTGCTTCAATGTTTCTCAAGATTGATCTTACTGCTTATCACAATATCTGGCAAGAGTTTGAGGCAACACCATCCATTCTTCGAGATATCTCGCAGCAATTAATGGAGCTCGTTTAAATGTATAAAGAATGTGATGTGATCATAGTGACTTCTGGATTCAATGTACATAGTATATTTGGCGCTGTATTCTGTTTTAAAAAATGCCTAAGGCAACCATTACACAGAGAATTCTGTGCTGTTTATGTTCTAGTTTGATATATAATTCGGACTACATGCTGAGGGGTTGTGACCTATAGTTCAGTGTTTCAAGTCCATAAGTGTGTGCTCAAATCTCAATCTTGTGTTATCCTTTGTATTCATTTAGTTGATGCCTTCTGATCTCATGTTAAGTATATACCGACAACGTGGCCAAGTTTAGTGGAGCATTTGCATTTGCAATTATGCGTACCGCAATCGTTATATTTGGAAGTACAAAAAGCT

>Glyma.11g004500.3 sequence-type=transcript locus=Glyma.11g004500 ID=Glyma.11g004500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTATCTTTGGTCAGTTTGGTGTTGAACATCTATTTTAAGATAGTTGTGCATGCGAACTGATAACCAAAATCACCCTATATATATAATCACATGGAATAGATCGAGTTGTTATAAGAAGTTGTGTTCCTGGACGATGTTATTACTATTGTTTCTCAATTTTGAAATTAACGGAGGCTAAAGATGTGAATAGTGCTGATTAAAATCCTGGTTGTTATTTTTTTCATGTACGGCGCGGATGGGTAGGCCAATAATAGAACTGGTTTTGAAATCATGGGTGCAGATTTTCGTCAATGATGATTACTGAACAAACAATGAGTTTGGTAGCATTGAGTGGTAATTAAAATTTGCCTTCTCCGGCAGAAACCAGATTGTTGGTTTCTTTTTCTTGGTGTTGGACCCAGTTGCTTGTCAGATAATTTGGATCGAATCTCAATTCAACGGAATGGGGCATATGCATTCACAGCAGGATTCGTGGCATTACTGCAGGTGGGGTGCATGGCTACTATGCTTTGTTTACAAGCTGCCATTGTTGTTGATCTTCAAATTTCAAATCTTCGCAACGCAAGGCAAGGCTGTTCTTTCTTCTTTGTTACAACTCTAATTTTCCATTCCAATTGCAATCTCTAAACGTTGATTTTATAATAAATTTGCTCCTCTGCAATCAGGAATTATGTCTTTTGGATGGAATTTGCAAGCACCCGGACATGATTTACATGGTGTTTATTGGTCCACCTGTGATGGAAACAACTTCAACAATGGCAACCGGAAACGAAGCAGGATCAGCTATTATCATGGGAATTCTAACATTCATAATAATTACTGGGCAGAACACGGTGTCTATTCTAATGTTTACCACTTTGATTATGGTAATCATTTTCAGTGTGATGCAGACCCGTTATCTTTGAAAAGGAGAAAACATTCATCTCCTATTTGTGAAAACAACCAGAAATACTATCTTCCATCTACTGTCCAAGGCAATATCCCTTCATCTGTTAACTTCCAAGCATCTCCCACAAGATCCAATGTTGATACCTCTGTATCACCTATCTGTAAGCTTGATTGTTCTATATTTGAAGATAAAGAGCTGGTGTTTATGTCAAGGGATGAGATTGATAGATGTTCTCCATCAAGAAAAGATGGTATTGATGTACTTCGTGAGAGACACTTGCGCTACTCTTACTGTGCCTTCCTTCAAAATCTTGGGATGTGGCTCAACTTGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTTTTGATTGCTACTGCTGCCCTTTTTCTTGTTGGAAAGTCAGAGGAAACACCGTGTCCTTTGAATAATGTGTTGCAAGCATCCAGTGAAATCTTACATGAACAAGATTTTACTTTGCTGTCCTATCTGCTTCCTGTTGGTTGGTTTGAAAAGTATCATGATCGAGTGCTTGAGGCAGAGCTGTTGTTGCTTACTACTCTAAATTTTGAACTCAATGTGGAGCATCCTTATACATCTCTTACATCTGTCCTTAACAAATTAGACCCATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGATCAGCAAAGGTGATAGAGGATTTAGTGAGTTAATCTGTAGTGCCGAATAAGATGCATTCATCACAAGCATTCCGATTCGCATATTAGCAAGGCTGTCCAGATCAAAATGTAGAGCAGAAGATGTTGCATTGGCATTAGCTTTGAAAGATTCAATTGTTTGCAACGTGCAGCACCCCATGCTTCAGAGCTCTCTATGGCTTCAGTATAAACCACATCATATTGCTGCTGGAGCTGCATATCTTGCTTCAATGTTTCTCAAGATTGATCTTACTGCTTATCACAATATCTGGCAAGAGTTTGAGGCAACACCATCCATTCTTCGAGATATCTCGCAGCAATTAATGGAGCTCGTTTAAATGTATAAAGAATGTGATGTGATCATAGTGACTTCTGGATTCAATGTACATAGTATATTTGGCGCTGTATTCTGTTTTAAAAAATGCCTAAGGCAACCATTACACAGAGAATTCTGTGCTGTTTATGTTCTAGTTTGATATATAATTCGGACTACATGCTGAGGGGTTGTGACCTATAGTTCAGTGTTTCAAGTCCATAAGTGTGTGCTCAAATCTCAATCTTGTGTTATCCTTTGTATTCATTTAGTTGATGCCTTCTGATCTCATGTTAAGTATATACCGACAACGTGGCCAAGTTTAGTGGAGCATTTGCATTTGCAATTATGCGTACCGCAATCGTTATATTTGGAAGTACAAAAAGCT

Coding sequences of Glyma.11g004500

Limit To All Plant Sequences

>Glyma.11g004500.1 sequence-type=CDS polypeptide=Glyma.11g004500.1.p locus=Glyma.11g004500 ID=Glyma.11g004500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTTGGATGGAATTTGCAAGCACCCGGACATGATTTACATGGTGTTTATTGGTCCACCTGTGATGGAAACAACTTCAACAATGGCAACCGGAAACGAAGCAGGATCAGCTATTATCATGGGAATTCTAACATTCATAATAATTACTGGGCAGAACACGGTGTCTATTCTAATGTTTACCACTTTGATTATGGTAATCATTTTCAGTGTGATGCAGACCCGTTATCTTTGAAAAGGAGAAAACATTCATCTCCTATTTGTGAAAACAACCAGAAATACTATCTTCCATCTACTGTCCAAGGCAATATCCCTTCATCTGTTAACTTCCAAGCATCTCCCACAAGATCCAATGTTGATACCTCTGTATCACCTATCTGTAAGCTTGATTGTTCTATATTTGAAGATAAAGAGCTGGTGTTTATGTCAAGGGATGAGATTGATAGATGTTCTCCATCAAGAAAAGATGGTATTGATGTACTTCGTGAGAGACACTTGCGCTACTCTTACTGTGCCTTCCTTCAAAATCTTGGGATGTGGCTCAACTTGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTTTTGATTGCTACTGCTGCCCTTTTTCTTGTTGGAAAGTCAGAGGAAACACCGTGTCCTTTGAATAATGTGTTGCAAGCATCCAGTGAAATCTTACATGAACAAGATTTTACTTTGCTGTCCTATCTGCTTCCTGTTGGTTGGTTTGAAAAGTATCATGATCGAGTGCTTGAGGCAGAGCTGTTGTTGCTTACTACTCTAAATTTTGAACTCAATGTGGAGCATCCTTATACATCTCTTACATCTGTCCTTAACAAATTAGACCCATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGATCAGCAAAGGGCTTCAGAGCTCTCTATGGCTTCAGTATAAACCACATCATATTGCTGCTGGAGCTGCATATCTTGCTTCAATGTTTCTCAAGATTGATCTTACTGCTTATCACAATATCTGGCAAGAGTTTGAGGCAACACCATCCATTCTTCGAGATATCTCGCAGCAATTAATGGAGCTCGTTTAA

>Glyma.11g004500.2 sequence-type=CDS polypeptide=Glyma.11g004500.2.p locus=Glyma.11g004500 ID=Glyma.11g004500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTTGGATGGAATTTGCAAGCACCCGGACATGATTTACATGGTGTTTATTGGTCCACCTGTGATGGAAACAACTTCAACAATGGCAACCGGAAACGAAGCAGGATCAGCTATTATCATGGGAATTCTAACATTCATAATAATTACTGGGCAGAACACGGTGTCTATTCTAATGTTTACCACTTTGATTATGGTAATCATTTTCAGTGTGATGCAGACCCGTTATCTTTGAAAAGGAGAAAACATTCATCTCCTATTTGTGAAAACAACCAGAAATACTATCTTCCATCTACTGTCCAAGGCAATATCCCTTCATCTGTTAACTTCCAAGCATCTCCCACAAGATCCAATGTTGATACCTCTGTATCACCTATCTGTAAGCTTGATTGTTCTATATTTGAAGATAAAGAGCTGGTGTTTATGTCAAGGGATGAGATTGATAGATGTTCTCCATCAAGAAAAGATGGTATTGATGTACTTCGTGAGAGACACTTGCGCTACTCTTACTGTGCCTTCCTTCAAAATCTTGGGATGTGGCTCAACTTGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTTTTGATTGCTACTGCTGCCCTTTTTCTTGTTGGAAAGTCAGAGGAAACACCGTGTCCTTTGAATAATGTGTTGCAAGCATCCAGTGAAATCTTACATGAACAAGATTTTACTTTGCTGTCCTATCTGCTTCCTGTTGGTTGGTTTGAAAAGTATCATGATCGAGTGCTTGAGGCAGAGCTGTTGTTGCTTACTACTCTAAATTTTGAACTCAATGTGGAGCATCCTTATACATCTCTTACATCTGTCCTTAACAAATTAGACCCATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGATCAGCAAAGGTGATAGAGGATTTAGTGAGTTAATCTGTAGTGCCGAATAA

>Glyma.11g004500.3 sequence-type=CDS polypeptide=Glyma.11g004500.3.p locus=Glyma.11g004500 ID=Glyma.11g004500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTTGGATGGAATTTGCAAGCACCCGGACATGATTTACATGGTGTTTATTGGTCCACCTGTGATGGAAACAACTTCAACAATGGCAACCGGAAACGAAGCAGGATCAGCTATTATCATGGGAATTCTAACATTCATAATAATTACTGGGCAGAACACGGTGTCTATTCTAATGTTTACCACTTTGATTATGGTAATCATTTTCAGTGTGATGCAGACCCGTTATCTTTGAAAAGGAGAAAACATTCATCTCCTATTTGTGAAAACAACCAGAAATACTATCTTCCATCTACTGTCCAAGGCAATATCCCTTCATCTGTTAACTTCCAAGCATCTCCCACAAGATCCAATGTTGATACCTCTGTATCACCTATCTGTAAGCTTGATTGTTCTATATTTGAAGATAAAGAGCTGGTGTTTATGTCAAGGGATGAGATTGATAGATGTTCTCCATCAAGAAAAGATGGTATTGATGTACTTCGTGAGAGACACTTGCGCTACTCTTACTGTGCCTTCCTTCAAAATCTTGGGATGTGGCTCAACTTGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTTTTGATTGCTACTGCTGCCCTTTTTCTTGTTGGAAAGTCAGAGGAAACACCGTGTCCTTTGAATAATGTGTTGCAAGCATCCAGTGAAATCTTACATGAACAAGATTTTACTTTGCTGTCCTATCTGCTTCCTGTTGGTTGGTTTGAAAAGTATCATGATCGAGTGCTTGAGGCAGAGCTGTTGTTGCTTACTACTCTAAATTTTGAACTCAATGTGGAGCATCCTTATACATCTCTTACATCTGTCCTTAACAAATTAGACCCATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGATCAGCAAAGGTGATAGAGGATTTAGTGAGTTAATCTGTAGTGCCGAATAA

Predicted protein sequences of Glyma.11g004500

Limit To All Plant Sequences

>Glyma.11g004500.1.p sequence-type=predicted peptide transcript=Glyma.11g004500.1 locus=Glyma.11g004500 ID=Glyma.11g004500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFGWNLQAPGHDLHGVYWSTCDGNNFNNGNRKRSRISYYHGNSNIHNNYWAEHGVYSNVYHFDYGNHFQCDADPLSLKRRKHSSPICENNQKYYLPSTVQGNIPSSVNFQASPTRSNVDTSVSPICKLDCSIFEDKELVFMSRDEIDRCSPSRKDGIDVLRERHLRYSYCAFLQNLGMWLNLPQTTIGTAMVLCHRFFVRRSHACHDRFLIATAALFLVGKSEETPCPLNNVLQASSEILHEQDFTLLSYLLPVGWFEKYHDRVLEAELLLLTTLNFELNVEHPYTSLTSVLNKLDPSKTVLVNLALNLISKGLQSSLWLQYKPHHIAAGAAYLASMFLKIDLTAYHNIWQEFEATPSILRDISQQLMELV*

>Glyma.11g004500.2.p sequence-type=predicted peptide transcript=Glyma.11g004500.2 locus=Glyma.11g004500 ID=Glyma.11g004500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFGWNLQAPGHDLHGVYWSTCDGNNFNNGNRKRSRISYYHGNSNIHNNYWAEHGVYSNVYHFDYGNHFQCDADPLSLKRRKHSSPICENNQKYYLPSTVQGNIPSSVNFQASPTRSNVDTSVSPICKLDCSIFEDKELVFMSRDEIDRCSPSRKDGIDVLRERHLRYSYCAFLQNLGMWLNLPQTTIGTAMVLCHRFFVRRSHACHDRFLIATAALFLVGKSEETPCPLNNVLQASSEILHEQDFTLLSYLLPVGWFEKYHDRVLEAELLLLTTLNFELNVEHPYTSLTSVLNKLDPSKTVLVNLALNLISKGDRGFSELICSAE*

>Glyma.11g004500.3.p sequence-type=predicted peptide transcript=Glyma.11g004500.3 locus=Glyma.11g004500 ID=Glyma.11g004500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFGWNLQAPGHDLHGVYWSTCDGNNFNNGNRKRSRISYYHGNSNIHNNYWAEHGVYSNVYHFDYGNHFQCDADPLSLKRRKHSSPICENNQKYYLPSTVQGNIPSSVNFQASPTRSNVDTSVSPICKLDCSIFEDKELVFMSRDEIDRCSPSRKDGIDVLRERHLRYSYCAFLQNLGMWLNLPQTTIGTAMVLCHRFFVRRSHACHDRFLIATAALFLVGKSEETPCPLNNVLQASSEILHEQDFTLLSYLLPVGWFEKYHDRVLEAELLLLTTLNFELNVEHPYTSLTSVLNKLDPSKTVLVNLALNLISKGDRGFSELICSAE*

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