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Report for Sequence Feature Glyma.11g003500

Feature Type:gene_model
Chromosome:Gm11
Start:260784
stop:263805
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g003500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G28237.1AT Pyridoxal-5'-phosphate-dependent enzyme family protein JGI N/AIEA
GO:0000162GO-bp tryptophan biosynthetic process EnsemblGenomesN/AIEA
GO:0006568GO-bp tryptophan metabolic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009073GO-bp aromatic amino acid family biosynthetic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004834GO-mf tryptophan synthase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
KOG1395 KOG Tryptophan synthase beta chain JGI N/AIEA
PTHR10314Panther SER/THR DEHYDRATASE, TRP SYNTHASE JGI N/AIEA
PTHR10314:SF3Panther TRYPTOPHAN SYNTHASE JGI N/AIEA
PF00291PFAM Pyridoxal-phosphate dependent enzyme JGI N/AIEA
TRPSYN-PWYSoyCyc9 L-tryptophan biosynthesis Plant Metabolic Network ISS
GN7V-59000SoyCyc9-rxn tryptophan synthase (indole-salvaging) Plant Metabolic Network ISS

Proteins Associated with Glyma.11g003500
LocusGene SymbolProtein Name
TSB tryptophan synthase beta subunit

Expression Patterns of Glyma.11g003500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g003500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g00580 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g003500
>Glyma.11g003500.1 sequence-type=CDS polypeptide=Glyma.11g003500.1.p locus=Glyma.11g003500 ID=Glyma.11g003500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGCGAACAAATTGCAAGGGGCAATTGTTAGCTGCCATTCCAGAACAAGGCAGTTGTCGATAGATGAGAAAGGGCGCGCCATCTCCGCTGTGCTCACTACTCATCAGGAACCCTTTAAGACTAAGGTTCCTGAGTTGACAATTAGCCATGTGCCCCCACCTACACCCTCCATCAAGAACAAAGACTTCATCATCCCCTCCACCACTAGTGGAAAGTTTGGTAGGTTTGGTGGCAAGTTTGTACCTGAGACACTTGTAGCTTCTTTGACCCAGCTCGAAGCAGAGTTCAAAAACGCCCTCCGTGATCATGCTTTTCAGGCAGAGCTAGCGGAGGCATTAAGAGACTATGCGGGGAGAGAGACACCTCTGTATCATGCAAAGCGATTGTCGGAGTATTACAAGAGCGTGAATAATGGGAAGGGGCCTGACATATACTTAAAGAGAGAGGATCTCAACCACAGTGGCTCTCACAAGATGAACAACGCTCTTGCTCAAGCCATGATTGCTAAGCGCATGGGCTGCAAAAGCGTCGTCACCGCCACTGGCTCTGGACAACATGGCCTTGCAACAGCTGCAGCTTGCGCAAAACTTGCTTTGGACTGCACCGTCTTCATGGCCGACAAAGACATCCACAGACAATATTCAAATGTGAGGTTGATCAAGTTGTTGGGAGCTCAGGTTGAAGCAGTAGATGGAGGGTTCACAGATGCAGCATCAGAGGCGTTTCGGTATTGGGTAGGGGATTTGGAAAACAGGTACCACTTGAGTGGCTCAGCGGTGGGACCACACCCGTGTCCAACCATGGTTCGGGAGTTTCAGTCAGTGATAGGGAAAGAAACGAGGATGCAAGCATTGGAAAAATGGGGTGGGAAGCCAGATGTTCTTGTTGCCAGCGTAGGGACTGGGTCAAACGCTTTGGGTCTGTTTCATGAGTTTATAGCAGACAAAGATGTGAGGTTCGTTGGAGTTGAGGCTGGGGGTTTGGGCTTGGAGAGTGGAAAGCATTCTTCAACGTTGACCACAGGAGAAGTGGGTGCGTACCATGGAGCCATCAGCTATTTACTGCAGGACCAAGATGGTCAAATTATTCATCCACATTCCATCGCTGCTGGGATGGAGTATCCAGGAGTTGGTCCAGAGTTAAGCTTCCTTAAAGAAAGCGGGCGTGCGGAATTCTGCGTTGCAAATGATGAAGAGGCTCTTGATGCGTACCAAAGACTATGCAAATTAGAGGGCATATTTCCCTCTTTGGAGGCCGCACATGCATTGGCTATCTTAGATAAATTGGTCCCTACTCTATGCAATGGTACTAAGGTTGTTGTGAATTGTAGTGGGCGAGGAGATAAGGATGCAGCAATAGTCTTCAATCGGGGAATATATATTTGA
Predicted protein sequences of Glyma.11g003500
>Glyma.11g003500.1.p sequence-type=predicted peptide transcript=Glyma.11g003500.1 locus=Glyma.11g003500 ID=Glyma.11g003500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMANKLQGAIVSCHSRTRQLSIDEKGRAISAVLTTHQEPFKTKVPELTISHVPPPTPSIKNKDFIIPSTTSGKFGRFGGKFVPETLVASLTQLEAEFKNALRDHAFQAELAEALRDYAGRETPLYHAKRLSEYYKSVNNGKGPDIYLKREDLNHSGSHKMNNALAQAMIAKRMGCKSVVTATGSGQHGLATAAACAKLALDCTVFMADKDIHRQYSNVRLIKLLGAQVEAVDGGFTDAASEAFRYWVGDLENRYHLSGSAVGPHPCPTMVREFQSVIGKETRMQALEKWGGKPDVLVASVGTGSNALGLFHEFIADKDVRFVGVEAGGLGLESGKHSSTLTTGEVGAYHGAISYLLQDQDGQIIHPHSIAAGMEYPGVGPELSFLKESGRAEFCVANDEEALDAYQRLCKLEGIFPSLEAAHALAILDKLVPTLCNGTKVVVNCSGRGDKDAAIVFNRGIYI*






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