Glyma.11g003300

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Report for Sequence Feature Glyma.11g003300

Feature Type:	gene_model
Chromosome:	Gm11
Start:	219372
stop:	222023
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g003300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20580.1	AT	COBRA-like protein 10 precursor	JGI	N/A	IEA
GO:0010215	GO-bp	cellulose microfibril organization	EnsemblGenomes	N/A	IEA
GO:0010215	GO-bp	cellulose microfibril organization	JGI	N/A	IEA
GO:0016049	GO-bp	cell growth	EnsemblGenomes	N/A	IEA
GO:0016049	GO-bp	cell growth	JGI	N/A	IEA
GO:0031225	GO-cc	anchored component of membrane	EnsemblGenomes	N/A	IEA
GO:0031225	GO-cc	anchored component of membrane	JGI	N/A	IEA
PF04833	PFAM	COBRA-like protein	JGI	N/A	IEA

Proteins Associated with Glyma.11g003300

Locus	Gene Symbol	Protein Name
	COBL14	Regulates cell wall expansion and cellulose depostion

Expression Patterns of Glyma.11g003300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g003300

Paralog	Evidence	Comments
Glyma.01g240200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g003300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g00560	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.11g003300

Limit To All Plant Sequences

>Glyma.11g003300.1 sequence-type=CDS polypeptide=Glyma.11g003300.1.p locus=Glyma.11g003300 ID=Glyma.11g003300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTAGTCCATTGCTATCATTATCATTAGTGCTGCTATTCTTGATTTCATGTGGAAATATTCATGAATGTGAAGCTCAAGATACCGAGGCTTTGCCTCCAGCAGCAGAAACTTGTAACGGGGTTTTCATTTCCTATGACTTTCTCACTCGAAGAAAAGAATTCCCTCGCGTGAAGAATGCCACGGCACAGTCTTGGGCCTTCAATTCCACCGCAACAGTTCTCAACACCGGCAAAGACGTGGTTAAGGCGTGGAGGCTGTTCATAGGTTTTCAACATGACGAGATTCTAATCTCTGCCAGCGGAGGTAATCTAATCGATGGAACTGACTTCCCTGCTCTGGTAGGAAATGGCACTACCTTTGTTGGATCTTCTGTGCCAGATTTGGATAGCTCCATCAACACAGCTCAAGATTTAACCCAAATTTCAGCCATGATCCAGCTTATTGGCACCCAGTTTGGAGTAAGGCCTCCTACTATTCCTATGCCCAAAACCATCAAGTTGGTAAATGATGGTTACAAGTGCCCCCTACCAACTACCCGTAAGGGTTCCATGTATGCGTGTTGTAAAAAAGACCCTAAATTCAAGGCTGTACTACGGAAGACAAAATTCTTGCCACGGCAACAAGGGGATCTTACCATATCCTATGACGTGAATCAAGTGTATGAGAATAATTATATGGTAGAGGTGACCATGGAGAACAATCACCTTTTGGGACGGCTGGATCATTGGAACTTGACTTGGGAGTGGACAAGAGGGGAGTTTATATACAGTATGAAAGGTGCTTTCACACGTGTGATAGAATATTCAGGTTGCATCTATGGAGCTGCAGGACAGTATTACAAGGACATGGATTTTTCTAAAGTCGTTAACTGTCAAAAGAATCCAATAATCAGTGACTTGCCTCCAGAGAAAGCTAATGACACTGAAATTGGAAAGATACCTCACTGTTGCAAAAACGGAACTCTTCTACCTATCCTTATGGATCCAAGCAAATCCAAGTCTGTTTTCCAAATGCAAGTGTTCAAAGTTCCACCTGATCTAAACAAAACAGCAATTTTCCCTCCAGAGAAATGGAAAATAACGGGCATTCTCAACCCGGAATACAGATGTGGGGCACCTATTAGAGTGGATCCTGCACAATCTCAAGATCCCAGGGGACTTGAAGCAACGGTTATTGCCATTTCAAGTTGGCAAATAGTCTGCAATATCACTAAGCCAACCAAGAGGAGCACTCGCTGCTGTGTTTCTTTCTCTGCTTATTACAATGAGTCCATAGTACCTTGCAACACATGTGCCTGTGGTTGTGATGAAAATAACAGAAGATGTAATCCGAATTCACCAGCAATGCTTCTCCCTCCAGAAGCTCTTCTTGTACCCTTTGAGAATAGGACAAAAAAGACAGTTGCTTGGGCCAAACTAAAGCATTTTAAAGTCCCAACAAAATTACCATGTGCTGACAACTGTGGAGTTAGCATAAACTGGCATGTAGTTTCGGACTTCAAAGGTGGGTGGAGTGCCAGAATCACTATGTTCAATTGGCAGCATACGAATTTTGAGAATTGGTTCACTGCACTGCAATTCAAGAAGAAGACTGCTCTTGGTTACGAAAAAGTTTATTCTTTTAATGGAACATTCCTTCCGAAGCTCAATCATACTATTTTCTTGCAAGGAACACAAGGATCAAACTTTTTGTTAGCTTTAGACAATGGAACAAACCCAAAGGTGCCCGGAAAAGCACAATCTGTTCTTTCCTTTACTAAGAAGTTTGCACCAGGCATGAAAATTGCAAAAGGAGATGGGTTCCCATCAAGGGTCTTTTTTAATGGTGAAGAGTGTTCTATTCCTACCCGTTTCCCTGTGGGAAATGGAAACCAACATAATGCAGATTCATTAAACCTACACCTACTATTAGCTTTAGTCCTAGCTTTTACAATGAGTATAATATTGTATTAA

Predicted protein sequences of Glyma.11g003300

Limit To All Plant Sequences

>Glyma.11g003300.1.p sequence-type=predicted peptide transcript=Glyma.11g003300.1 locus=Glyma.11g003300 ID=Glyma.11g003300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSPLLSLSLVLLFLISCGNIHECEAQDTEALPPAAETCNGVFISYDFLTRRKEFPRVKNATAQSWAFNSTATVLNTGKDVVKAWRLFIGFQHDEILISASGGNLIDGTDFPALVGNGTTFVGSSVPDLDSSINTAQDLTQISAMIQLIGTQFGVRPPTIPMPKTIKLVNDGYKCPLPTTRKGSMYACCKKDPKFKAVLRKTKFLPRQQGDLTISYDVNQVYENNYMVEVTMENNHLLGRLDHWNLTWEWTRGEFIYSMKGAFTRVIEYSGCIYGAAGQYYKDMDFSKVVNCQKNPIISDLPPEKANDTEIGKIPHCCKNGTLLPILMDPSKSKSVFQMQVFKVPPDLNKTAIFPPEKWKITGILNPEYRCGAPIRVDPAQSQDPRGLEATVIAISSWQIVCNITKPTKRSTRCCVSFSAYYNESIVPCNTCACGCDENNRRCNPNSPAMLLPPEALLVPFENRTKKTVAWAKLKHFKVPTKLPCADNCGVSINWHVVSDFKGGWSARITMFNWQHTNFENWFTALQFKKKTALGYEKVYSFNGTFLPKLNHTIFLQGTQGSNFLLALDNGTNPKVPGKAQSVLSFTKKFAPGMKIAKGDGFPSRVFFNGEECSIPTRFPVGNGNQHNADSLNLHLLLALVLAFTMSIILY*

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