Glyma.11g002900

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Report for Sequence Feature Glyma.11g002900

Feature Type:	gene_model
Chromosome:	Gm11
Start:	186318
stop:	188854
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g002900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21220.1	AT	Trimeric LpxA-like enzymes superfamily protein	JGI	N/A	IEA
GO:0009245	GO-bp	lipid A biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0016410	GO-mf	N-acyltransferase activity	EnsemblGenomes	N/A	IEA
PTHR22572	Panther	SUGAR-1-PHOSPHATE GUANYL TRANSFERASE	JGI	N/A	IEA
PTHR22572:SF41	Panther		JGI	N/A	IEA
PF00132	PFAM	Bacterial transferase hexapeptide (six repeats)	JGI	N/A	IEA
NAGLIPASYN-PWY	SoyCyc9	lipid IV_A biosynthesis	Plant Metabolic Network		ISS
GN7V-66493	SoyCyc9-rxn	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.11g002900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g002900 not represented in the dataset	Glyma.11g002900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g002900

Paralog	Evidence	Comments
Glyma.01g240700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g002900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g00520	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g002900

Limit To All Plant Sequences

>Glyma.11g002900.2 sequence-type=transcript locus=Glyma.11g002900 ID=Glyma.11g002900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTGACTACTTTTGGTCTTATGCAACCAAGTGCGATGACGATGACTATGGCTGTAAGGAGGGTACTTGGCTTTGCTTAAAAAAAAACCCCTTTTCTGAATCTCAATCAAAATGCAAACTTGCGCCATATTCTCCCTTCTCCTCGTCATATCTCCGCATTTTCAGGTATAATGTCGCACTTAGTAATTTCTGTATAGGTGATTCATGTGTAATCCACAATGGAGTCTGCATTGGTCAAGATGGATTTGGATTTTACGTGGATGGTGATGGTAATATGATAAAGAAGCCTCAGATGTTGAATGTAATAATTGGGAACAATGTGGAAATTGGTGCAAATACCTGCATTGATAGAGGCAGCTGGCGAGATACAGTTATTGGGGACAATTCAAAAATAGATAATTTAGTTCAGAATTGTTTGCTTTGTGGACAAGTTGGGATTGCAGGTTCAGCAATCATAGGAGATTATGTGACTACGGAAGGAAGGGTAGCAGTACGAGATCATTTATCCATCATATCAAAGCAAGTTGTGTAACCAAGGACATCAAAGAGCCTGGGGACTATGGTGGCTTTCCAGCTGTTTTAATTCACCAATGGCGGATACAAGTTGCCAGTAGATGTCAGACTCTGGGGTAGAAGCAAGGATATGTCCCATGTACAGTGGAAGCAAGAATCTTTCTAGGTAC

>Glyma.11g002900.3 sequence-type=transcript locus=Glyma.11g002900 ID=Glyma.11g002900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTGACTACTTTTGGTCTTATGCAACCAAGTGCGATGACGATGACTATGGCTGTAAGGAGGGTACTTGGCTTTGCTTAAAAAAAAACCCCTTTTCTGAATCTCAATCAAAATGCAAACTTGCGCCATATTCTCCCTTCTCCTCGTCATATCTCCGCATTTTCAGGTATAATGTCGCACTTAGTAATTTCTGTATAGGTGATTCATGTGTAATCCACAATGGAGTCTGCATTGGTCAAGATGGATTTGGATTTTACGTGGATGGTGATGGTAATATGATAAAGAAGCCTCAGATGTTGAATGTAATAATTGGGAACAATGTGGAAATTGGTGCAAATACCTGCATTGATAGAGGCAGCTGGCGAGATACAGTTATTGGGGACAATTCAAAAATAGATAATTTAGTTCAGAATTGTTTGCTTTGTGGACAAGTTGGGATTGCAGGTTCAGCAATCATAGGAGATTATGTGACTACGGAAGGAAGGGTAGCAGTACGAGATCATTTATCCATCATATCAAAGGTTTTAATTCACCAATGGCGGATACAAGTTGCCAGTAGATGTCAGACTCTGGGGTAGAAGCAAGGATATGTCCCATGTACAGTGGAAGCAAGAATCTTTCTAGGTAC

Coding sequences of Glyma.11g002900

Limit To All Plant Sequences

>Glyma.11g002900.1 sequence-type=CDS polypeptide=Glyma.11g002900.1.p locus=Glyma.11g002900 ID=Glyma.11g002900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTGACTACTTTTGGTCTTATGCAACCAAGTGCGATGACGATGACTATGGCTGTAAGGAGGGTACTTGGCTTTGCTTAAAAAAAAACCCCTTTTCTGAATCTCAATCAAAATGCAAACTTGCGCCATATTCTCCCTTCTCCTCGTCATATCTCCGCATTTTCAGGTATAATGTCGCACTTAGTAATTTCTGTATAGGTGATTCATGTGTAATCCACAATGGAGTCTGCATTGGTCAAGATGGATTTGGATTTTACGTGGATGGTGATGGTAATATGATAAAGAAGCCTCAGATGTTGAATGTAATAATTGGGAACAATGTGGAAATTGGTGCAAATACCTGCATTGATAGAGGCAGCTGGCGAGATACAGTTATTGGGGACAATTCAAAAATAGATAATTTAGTTCAGCATAGGAGATTATGTGACTACGGAAGGAAGGGTAGCAGTACGAGATCATTTATCCATCATATCAAAGCAAGTTGTGTAACCAAGGACATCAAAGAGCCTGGGGACTATGGTGGCTTTCCAGCTGTTTTAATTCACCAATGGCGGATACAAGTTGCCAGTAGATGTCAGACTCTGGGGTAG

>Glyma.11g002900.2 sequence-type=CDS polypeptide=Glyma.11g002900.2.p locus=Glyma.11g002900 ID=Glyma.11g002900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTGACTACTTTTGGTCTTATGCAACCAAGTGCGATGACGATGACTATGGCTGTAAGGAGGGTACTTGGCTTTGCTTAAAAAAAAACCCCTTTTCTGAATCTCAATCAAAATGCAAACTTGCGCCATATTCTCCCTTCTCCTCGTCATATCTCCGCATTTTCAGGTATAATGTCGCACTTAGTAATTTCTGTATAGGTGATTCATGTGTAATCCACAATGGAGTCTGCATTGGTCAAGATGGATTTGGATTTTACGTGGATGGTGATGGTAATATGATAAAGAAGCCTCAGATGTTGAATGTAATAATTGGGAACAATGTGGAAATTGGTGCAAATACCTGCATTGATAGAGGCAGCTGGCGAGATACAGTTATTGGGGACAATTCAAAAATAGATAATTTAGTTCAGAATTGTTTGCTTTGTGGACAAGTTGGGATTGCAGGTTCAGCAATCATAGGAGATTATGTGACTACGGAAGGAAGGGTAGCAGTACGAGATCATTTATCCATCATATCAAAGCAAGTTGTGTAA

>Glyma.11g002900.3 sequence-type=CDS polypeptide=Glyma.11g002900.3.p locus=Glyma.11g002900 ID=Glyma.11g002900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTGACTACTTTTGGTCTTATGCAACCAAGTGCGATGACGATGACTATGGCTGTAAGGAGGGTACTTGGCTTTGCTTAAAAAAAAACCCCTTTTCTGAATCTCAATCAAAATGCAAACTTGCGCCATATTCTCCCTTCTCCTCGTCATATCTCCGCATTTTCAGGTATAATGTCGCACTTAGTAATTTCTGTATAGGTGATTCATGTGTAATCCACAATGGAGTCTGCATTGGTCAAGATGGATTTGGATTTTACGTGGATGGTGATGGTAATATGATAAAGAAGCCTCAGATGTTGAATGTAATAATTGGGAACAATGTGGAAATTGGTGCAAATACCTGCATTGATAGAGGCAGCTGGCGAGATACAGTTATTGGGGACAATTCAAAAATAGATAATTTAGTTCAGAATTGTTTGCTTTGTGGACAAGTTGGGATTGCAGGTTCAGCAATCATAGGAGATTATGTGACTACGGAAGGAAGGGTAGCAGTACGAGATCATTTATCCATCATATCAAAGGTTTTAATTCACCAATGGCGGATACAAGTTGCCAGTAGATGTCAGACTCTGGGGTAG

Predicted protein sequences of Glyma.11g002900

Limit To All Plant Sequences

>Glyma.11g002900.1.p sequence-type=predicted peptide transcript=Glyma.11g002900.1 locus=Glyma.11g002900 ID=Glyma.11g002900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
SDYFWSYATKCDDDDYGCKEGTWLCLKKNPFSESQSKCKLAPYSPFSSSYLRIFRYNVALSNFCIGDSCVIHNGVCIGQDGFGFYVDGDGNMIKKPQMLNVIIGNNVEIGANTCIDRGSWRDTVIGDNSKIDNLVQHRRLCDYGRKGSSTRSFIHHIKASCVTKDIKEPGDYGGFPAVLIHQWRIQVASRCQTLG*

>Glyma.11g002900.2.p sequence-type=predicted peptide transcript=Glyma.11g002900.2 locus=Glyma.11g002900 ID=Glyma.11g002900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
SDYFWSYATKCDDDDYGCKEGTWLCLKKNPFSESQSKCKLAPYSPFSSSYLRIFRYNVALSNFCIGDSCVIHNGVCIGQDGFGFYVDGDGNMIKKPQMLNVIIGNNVEIGANTCIDRGSWRDTVIGDNSKIDNLVQNCLLCGQVGIAGSAIIGDYVTTEGRVAVRDHLSIISKQVV*

>Glyma.11g002900.3.p sequence-type=predicted peptide transcript=Glyma.11g002900.3 locus=Glyma.11g002900 ID=Glyma.11g002900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
SDYFWSYATKCDDDDYGCKEGTWLCLKKNPFSESQSKCKLAPYSPFSSSYLRIFRYNVALSNFCIGDSCVIHNGVCIGQDGFGFYVDGDGNMIKKPQMLNVIIGNNVEIGANTCIDRGSWRDTVIGDNSKIDNLVQNCLLCGQVGIAGSAIIGDYVTTEGRVAVRDHLSIISKVLIHQWRIQVASRCQTLG*

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