Glyma.11G230000

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.11G230000): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.11G230000): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.11G230000

Feature Type:	gene_model
Chromosome:	Gm11
Start:	32527636
stop:	32534024
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11G230000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40116.1	AT	Phosphoinositide-specific phospholipase C family protein	JGI	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	JGI	N/A	IEA
GO:0007165	GO-bp	signal transduction	EnsemblGenomes	N/A	IEA
GO:0007165	GO-bp	signal transduction	JGI	N/A	IEA
GO:0016042	GO-bp	lipid catabolic process	EnsemblGenomes	N/A	IEA
GO:0035556	GO-bp	intracellular signal transduction	EnsemblGenomes	N/A	IEA
GO:0035556	GO-bp	intracellular signal transduction	JGI	N/A	IEA
GO:0005622	GO-cc	intracellular	EnsemblGenomes	N/A	IEA
GO:0004435	GO-mf	phosphatidylinositol phospholipase C activity	EnsemblGenomes	N/A	IEA
GO:0004435	GO-mf	phosphatidylinositol phospholipase C activity	JGI	N/A	IEA
GO:0004871	GO-mf	signal transducer activity	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0008081	GO-mf	phosphoric diester hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
KOG0169	KOG	Phosphoinositide-specific phospholipase C	JGI	N/A	IEA
PTHR10336	Panther	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	JGI	N/A	IEA
PTHR10336:SF35	Panther		JGI	N/A	IEA
PF00168	PFAM	C2 domain	JGI	N/A	IEA
PF00387	PFAM	Phosphatidylinositol-specific phospholipase C, Y domain	JGI	N/A	IEA
PF00388	PFAM	Phosphatidylinositol-specific phospholipase C, X domain	JGI	N/A	IEA
PF09279	PFAM	Phosphoinositide-specific phospholipase C, efhand-like	JGI	N/A	IEA
LIPASYN-PWY	SoyCyc9	phospholipases	Plant Metabolic Network		ISS
PWY-6351	SoyCyc9	D-myo-inositol (1,4,5)-trisphosphate biosynthesis	Plant Metabolic Network		ISS
PWY-6367	SoyCyc9	D-myo-inositol-5-phosphate metabolism	Plant Metabolic Network		ISS
PWY-7039	SoyCyc9	phosphatidate metabolism, as a signaling molecule	Plant Metabolic Network		ISS
GN7V-58804	SoyCyc9-rxn	phosphoinositide phospholipase C	Plant Metabolic Network		ISS

Proteins Associated with Glyma.11G230000

Locus	Gene Symbol	Protein Name
	C2-117	C2 domain containing protein gene 117

Expression Patterns of Glyma.11G230000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11G230000 not represented in the dataset	Glyma.11G230000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11G230000

Paralog	Evidence	Comments
Glyma.18g027200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11G230000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g230000	Wm82.a4.v1	ISS	As supplied by JGI
Glyma11g35300	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11G230000

Limit To All Plant Sequences

>Glyma.11g230000.2 sequence-type=transcript locus=Glyma.11g230000 ID=Glyma.11g230000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATATTTTAAAAAATTAAATATTTTTCCATAAATGGCACTGTTCTTATGCCCTCAAGTATGTAGCATTCATATAGTCACAGCACGTTCACTACAATTGCAAAGTCCATTCCATTCCGCTGCGATCGCCATTTCTTTTCTGAAACACACACACCGACACCAATCACTCTCTTTGATCCATTCCGTTTACACGATTATGGCCAGTCACAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCCGACGTAGAAAGAGCGTTTTCTGAATTCGCCGCCGGCGCCTCCTCCCTGTCCGGCGATCACATCCTCCGGTTTCTGGCGGAGCACCAGGGCGATGTGGACTGCACCGCAGCGGATTCGGAGCGGATGCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGAATGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTCATTTCTCTATACTCCTCTTTCTTTCCCCAGAAAAATAATATTTAAGCAAGGTTTTTAATCCTTTTCTTCAGGATCTCATACAATTTGCCCCATGATTTGTTTGGCTTAATAGAAACAAATAAGAGAAAGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATATACTGGGCACAATTCCTATCTTACTGGGAATCAACTGAGCAGTGACTGCAGTGATGTACCAATCATAAAGGCTTTGCAAGGAGGTGTAAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACAAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACGACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCACTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGTCGAATTCTTATATCAACAAAACCACCAAAAGAATTTCTTGAATCCAAAGAATGTGATGACAAGGACAACGAAAAGGAATCAGCCGACGAGGTTTTGTCATTGCCAGACCAAACAAGTGAACGGGAAACTGATGATAAGAGTGCACCTGAGTACAAACGATTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATTCAGGATGAATTAAAAGCTGCTGGTGCTGTTAGGCGCTTAAGCTTGAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACGCAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACATACGGAGCTCAGATGGTTGCGTTCAACATGCAGGGGTATGGAAAATCACTTCGGTACATGCAAGGAATGTTTAGAGCAAATGGAGGGTGCGGTTATGTGAAAAAGCCTGAATTTCTAATTGAAAAAGGTCCATATAATGAGGTTTTTGATCCTAAAAGAACATTGCCCGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACCGGTTGGAGCTTAGATTTCAGCCAAACAGACTTCGATACTTACTCACCACCCGACTTTTACGTTAAGGTTTGTATTGTTGGAGTTCCAGCTGATATGGCCAAGAAGAAAACATGTGTAATTTCAAATAACTGGTTTCCTGTCTGGGATGAACAGTTTGATTTCCCTTTGACTGTTCCAGAGCTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGACAAGAGTCAAAAGGATGACTTTGGTGGACAGACGTGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTGTATGATGAAAAGGGTGACAAATTAAAGTCTGTGAAGCTTCTAATGCGGTTTCAGTTTAGATGAATTATAGGATCAGCCATATAATAATCTTTAGTTGCTTGCAATCGGGTATTTCTGGCTTTACTATGTTATATTTTCTGCACCATCAACATCAATATGAAACAGTATTAAGAACTTCCAATATTGTCACATGGCCTTTTTAGATTACACTGATAGCATGCAACTTTTAAAGTTTATACTGATGCTACCTGAGATTGTATCAAGTTGTGGTCCACAACCACGATTGCAGCAATCGCATTTACCAATCATAATTTAA

Coding sequences of Glyma.11G230000

Limit To All Plant Sequences

>Glyma.11g230000.1 sequence-type=CDS polypeptide=Glyma.11g230000.1.p locus=Glyma.11g230000 ID=Glyma.11g230000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTGTTCTTATGCCCTCAAGTATGTAGCATTCATATAGTCACAGCACGTTCACTACAATTGCAAAGTCCATTCCATTCCGCTGCGATCGCCATTTCTTTTCTGAAACACACACACCGACACCAATCACTCTCTTTGATCCATTCCGTTTACACGATTATGGCCAGTCACAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCCGACGTAGAAAGAGCGTTTTCTGAATTCGCCGCCGGCGCCTCCTCCCTGTCCGGCGATCACATCCTCCGGTTTCTGGCGGAGCACCAGGGCGATGTGGACTGCACCGCAGCGGATTCGGAGCGGATGCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGAATGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATATACTGGGCACAATTCCTATCTTACTGGGAATCAACTGAGCAGTGACTGCAGTGATGTACCAATCATAAAGGCTTTGCAAGGAGGTGTAAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACAAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACGACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCACTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGTCGAATTCTTATATCAACAAAACCACCAAAAGAATTTCTTGAATCCAAAGAATGTGATGACAAGGACAACGAAAAGGAATCAGCCGACGAGGTTTTGTCATTGCCAGACCAAACAAGTGAACGGGAAACTGATGATAAGAGTGCACCTGAGTACAAACGATTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATTCAGGATGAATTAAAAGCTGCTGGTGCTGTTAGGCGCTTAAGCTTGAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACGCAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACATACGGAGCTCAGATGGTTGCGTTCAACATGCAGGGGTATGGAAAATCACTTCGGTACATGCAAGGAATGTTTAGAGCAAATGGAGGGTGCGGTTATGTGAAAAAGCCTGAATTTCTAATTGAAAAAGGTCCATATAATGAGGTTTTTGATCCTAAAAGAACATTGCCCGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACCGGTTGGAGCTTAGATTTCAGCCAAACAGACTTCGATACTTACTCACCACCCGACTTTTACGTTAAGGTTTGTATTGTTGGAGTTCCAGCTGATATGGCCAAGAAGAAAACATGTGTAATTTCAAATAACTGGTTTCCTGTCTGGGATGAACAGTTTGATTTCCCTTTGACTGTTCCAGAGCTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGACAAGAGTCAAAAGGATGACTTTGGTGGACAGACGTGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTGTATGATGAAAAGGGTGACAAATTAAAGTCTGTGAAGCTTCTAATGCGGTTTCAGTTTAGATGA

>Glyma.11g230000.2 sequence-type=CDS polypeptide=Glyma.11g230000.2.p locus=Glyma.11g230000 ID=Glyma.11g230000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCTCCATTGTCACATTATTTCATATATACTGGGCACAATTCCTATCTTACTGGGAATCAACTGAGCAGTGACTGCAGTGATGTACCAATCATAAAGGCTTTGCAAGGAGGTGTAAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACAAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACGACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCACTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGTCGAATTCTTATATCAACAAAACCACCAAAAGAATTTCTTGAATCCAAAGAATGTGATGACAAGGACAACGAAAAGGAATCAGCCGACGAGGTTTTGTCATTGCCAGACCAAACAAGTGAACGGGAAACTGATGATAAGAGTGCACCTGAGTACAAACGATTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATTCAGGATGAATTAAAAGCTGCTGGTGCTGTTAGGCGCTTAAGCTTGAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACGCAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACATACGGAGCTCAGATGGTTGCGTTCAACATGCAGGGGTATGGAAAATCACTTCGGTACATGCAAGGAATGTTTAGAGCAAATGGAGGGTGCGGTTATGTGAAAAAGCCTGAATTTCTAATTGAAAAAGGTCCATATAATGAGGTTTTTGATCCTAAAAGAACATTGCCCGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACCGGTTGGAGCTTAGATTTCAGCCAAACAGACTTCGATACTTACTCACCACCCGACTTTTACGTTAAGGTTTGTATTGTTGGAGTTCCAGCTGATATGGCCAAGAAGAAAACATGTGTAATTTCAAATAACTGGTTTCCTGTCTGGGATGAACAGTTTGATTTCCCTTTGACTGTTCCAGAGCTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGACAAGAGTCAAAAGGATGACTTTGGTGGACAGACGTGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTGTATGATGAAAAGGGTGACAAATTAAAGTCTGTGAAGCTTCTAATGCGGTTTCAGTTTAGATGA

Predicted protein sequences of Glyma.11G230000

Limit To All Plant Sequences

>Glyma.11g230000.1.p sequence-type=predicted peptide transcript=Glyma.11g230000.1 locus=Glyma.11g230000 ID=Glyma.11g230000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALFLCPQVCSIHIVTARSLQLQSPFHSAAIAISFLKHTHRHQSLSLIHSVYTIMASHNYKVFSCFNRKFTVTEPGPPPDVERAFSEFAAGASSLSGDHILRFLAEHQGDVDCTAADSERMLQQSRKEDRESGMDLHDFFRFLLHDDFNSPIKSQVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQGGVRVIELDLWPNSDKDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKECDDKDNEKESADEVLSLPDQTSERETDDKSAPEYKRLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLRYMQGMFRANGGCGYVKKPEFLIEKGPYNEVFDPKRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTCVISNNWFPVWDEQFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLYDEKGDKLKSVKLLMRFQFR*

>Glyma.11g230000.2.p sequence-type=predicted peptide transcript=Glyma.11g230000.2 locus=Glyma.11g230000 ID=Glyma.11g230000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQGGVRVIELDLWPNSDKDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKECDDKDNEKESADEVLSLPDQTSERETDDKSAPEYKRLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLRYMQGMFRANGGCGYVKKPEFLIEKGPYNEVFDPKRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTCVISNNWFPVWDEQFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLYDEKGDKLKSVKLLMRFQFR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain