SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19780.2 | AT | JGI | N/A | IEA | |
| GO:0006457 | GO-bp | protein folding | EnsemblGenomes | N/A | IEA |
| GO:0034976 | GO-bp | response to endoplasmic reticulum stress | EnsemblGenomes | N/A | IEA |
| GO:0005783 | GO-cc | endoplasmic reticulum | EnsemblGenomes | N/A | IEA |
| GO:0003756 | GO-mf | protein disulfide isomerase activity | EnsemblGenomes | N/A | IEA |
| PF02622 | PFAM | Uncharacterized ACR, COG1678 | JGI | N/A | IEA |
|
Glyma.11G102200 not represented in the dataset |
Glyma.11G102200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g102200 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma11g10870 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g102200.1 sequence-type=CDS polypeptide=Glyma.11g102200.1.p locus=Glyma.11g102200 ID=Glyma.11g102200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGCTCTCCCTATTGACGGTGTTCATTGTAGCAATAGCATCGTTATCTCTTATTATTGCTGGTTCATCATCATCTCAATTCCAGTGGCAGATCCTCACCAAACACAATTTCTCTTCTCAGATCCGTCTCCATCCTCACCTCCTCCTTCTCGTCACCCTCCCCTGGTCCGGCGAGTCTAGATCCCTCATCAACCAACTTTCACTCGCACTCGCCGCCAAGCCGCCGCCGCAGCAGCAACACTTTGCCTCTCTCAAACTCATGCTCATGCACAGAAATACCGAGAAGCTTCTAGCGGATTCCATAGGTGCTACTGCTACCCCCGATGAAACCACACTCTTTTATTTCCATTATTCTGTTTCTTACAAGTACCGTGGAAGACTCAGAGCTCGCAATATTCTCTCCTCGTTGTATCCTTATATATCCCTTGCGCCCGAGGAGGTTCCTCTCGCGGCGCTCAACACTCCTCTGGATTTCAGATTATTTGTTGACTCCACGGAAAGAGCTCTTGTTCTCGTTGACTTTTGTGGATGGACGCCTAAGTTGCTCGCCAGTGATAATAACGGAACGCAAAATGCTTTCTCCGTGCTTGGGAATCACCATGGAATGGGTTTTAGCAGAGGGAATAATAGAATGCCTGTGTCAAAGGGGAAGACTAACAAGAAGGTGGCTGAGGAGGACACGTGCAAGGCTGAACTCGGTGTTGATAAAGGGTTTTGTGAAGTTCCTTGGCTGGGGGAGTTTACCTCGTTAAATTATGGTCCCTTGGAGGGCTCCAAGGATAGGAATCATCATGTTCTACATTCTTGTTCATCTGAAGAATTTGAGCGGTTTCATTCTTTCTACTTGAAATTCATGACTGTTGTGAGAGAATACTTTTTGCCTCCAGAGAAAAATAGATTTGGCTTGGTTTCAAGTAGGTCTATGCTTTCATCCCTAGGTGTTGGTGATTATGGCCCATGGTTTGCAGTTCACTACCTAGCTGGATGTTCAAGTTGTTCAAATATTCTTAAAGATGAGGATGACCTGAAATATGTTTTGCAGATGAATAATTATTTTGTCAAAGAGCTGGAAGGTAATGGACATGATCAAGAGCCCGTTCTACCAGCAAATAAGCCATCTGTACTTCTATTTGTTGATAGATCATCTGACTCCTCAGAAACTAGGGGGAAAAGTAAGGAGGCTCTTAAAGCTTTTAGAGTATTGGCACAACACTATCATCGTGTGAATCAGACTGGTAACAAGAATAATAACAGTCATGACAAATTTTCTATTCGAGATTATCATGGCTTCAAGAGTACATCTGAACATCCTAGGTTAAAGTTGTCTAGGCCAGCTCAGAAGATTAAACTAAAGGAGAAGATTTCTTCCATCATGATTATGAATGAGGGTAAGCAAGTTAGTTTGGACAATATTCCTTTGGATCTTCAAGGGAGTTCTTTGAATGATATATTGGCTTATCTTCTCCAGCAAAAGAAGGATGGAAAACTAAGCTCCCTAGCAAAGGATTTAGGCTTCCAACTTTTATCTGATGATATTGATGTCAGGTTAGCCAATACACAACAATCACATTCAGAAGTTCAGTCAAATCAATTTCCAACAGAAACTTCTCAAAAAGGCCATACAGATATTGTGATGCTGGATGGAGATACATATAGATCTGCTGGAGAGCTTGAGGAAAATCCCAAATCTACTGAGCTATCTTCTCGGAAAGATGAAGTAAAGAGACCTTCTATTGTCACACATGAAGAGATAAAATCTGTGGAAACTGAAGAATCGATTGCAGATCATGAACTTTCTACCGCTAAATTTATGCTACCAGAAACAGATGATTCTTCAGGTGGAAACAAGGATGAGGGTGAGCAGGCTCATTTTCTTGGTTTTAATGGGTTTTTTTTCTATTCTGATGGTAATTATCAATTACTTGAAAGACTCACGGGTGGTCGTGGAATTCCATCTTTGGTTATCGTTGATCCTTTTTGGCAGCAACACTATGTTTACCCTGATGAGAAAAGTTTCAACTTTTCTTCACTGTGTGATTTTCTTTCTGAGTTTCTTAATGGAACCTTACTTCCATACCAGCAGTCAGAACATGTTCTTCAAGGTCAAAGGGAGGCCACCCATCCTCCATTTGTTAATTTGGATTTTCATGAGGTGGATTCTATACCTCGAATCATGGCTCATACTTTCTCTGAACTTGTTATTGGTTTTAACCTTTCTAACAAAGAAAATACTTCTAATTCATGGAATAAAGATGTCCTGGTCTTGTTTAGCAATAGCTGGTGCTCATTTTGCCAAAGAATGGAAATGGTTGTTCGTGAAGTATATCGGGCCATCAAGGGCTATGTGGATATGTTAAACAGGGGATCTCAGAATGTGAAAGAAAATTTGAATCATGTCATGATGAAGCTTCCGGAAATCTACTTGTTGGACTGTACATTGAATGACTGTGATTTGATACTGAAGTCTGTAGATCAGAGGGAAGTTTATCCTGCTCTGATTTTATTTCCAGCAGAAAAGAAGCAGCCTCTTCTTTATGAAGGAGATATGGCTGTAATTGACGTTATGAAGTTTGTGGCTGAGCACGGAAGTAACTTCCATCAACTTATAAGAGACAAAGTGGCAGTTTTGTGGGTATCTGAAGGAGCAGTCAAGAATCAGAACTTACATGATACTTTGCAAACTGATATCCACCCGGAATCACTTCATTCACGTAACAAATATCATGGAGCCCCAGGTCCAGACAGAATGCTAGACCAGGTGGTCAGACCTAACCTGATGAATTCACCTGCATCAAATGAACTGCATGAAGCATCACCTCACGTGGTTATTGGTTCAGTGTTAATTGCCACAGAAAAGCTTTTGGGGGTTCATCCATTTGATGGATCAAAGATTCTCATTGTTGCAGCCAATCAAGTAACTGGATTTCAAGGTCTTATTCTCAACAAACATATACAATGGAGTTTTCTGCCTAAATTGGAAGAAGGCTTGGAAAATTTGAAAGAGGCTCCTCTGTCCCTGGGGGGTCCAGTAATGAAAACTGGAATGCCTCTTTTATCCTTAACTAGAACAGTTTCCGGAAATAATTTACCTGAAATCATCCCTGGAATTTACTTCCTTGATCAAGTAACAACAATTCGTAAAATTGAGGAGCTGAAGTCAGCAAATCAACCGGTTGGGGATTACTGGTTTTTCTTGGGGTATTCAAGTTGGGGATGGAACCAGTTATATGATGAGATGGCGGAAGGAGCTTGGAACTTGAGTGAGGATGCAACGAGAAATTTAAATTGGCCGTGA
>Glyma.11g102200.1.p sequence-type=predicted peptide transcript=Glyma.11g102200.1 locus=Glyma.11g102200 ID=Glyma.11g102200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKLSLLTVFIVAIASLSLIIAGSSSSQFQWQILTKHNFSSQIRLHPHLLLLVTLPWSGESRSLINQLSLALAAKPPPQQQHFASLKLMLMHRNTEKLLADSIGATATPDETTLFYFHYSVSYKYRGRLRARNILSSLYPYISLAPEEVPLAALNTPLDFRLFVDSTERALVLVDFCGWTPKLLASDNNGTQNAFSVLGNHHGMGFSRGNNRMPVSKGKTNKKVAEEDTCKAELGVDKGFCEVPWLGEFTSLNYGPLEGSKDRNHHVLHSCSSEEFERFHSFYLKFMTVVREYFLPPEKNRFGLVSSRSMLSSLGVGDYGPWFAVHYLAGCSSCSNILKDEDDLKYVLQMNNYFVKELEGNGHDQEPVLPANKPSVLLFVDRSSDSSETRGKSKEALKAFRVLAQHYHRVNQTGNKNNNSHDKFSIRDYHGFKSTSEHPRLKLSRPAQKIKLKEKISSIMIMNEGKQVSLDNIPLDLQGSSLNDILAYLLQQKKDGKLSSLAKDLGFQLLSDDIDVRLANTQQSHSEVQSNQFPTETSQKGHTDIVMLDGDTYRSAGELEENPKSTELSSRKDEVKRPSIVTHEEIKSVETEESIADHELSTAKFMLPETDDSSGGNKDEGEQAHFLGFNGFFFYSDGNYQLLERLTGGRGIPSLVIVDPFWQQHYVYPDEKSFNFSSLCDFLSEFLNGTLLPYQQSEHVLQGQREATHPPFVNLDFHEVDSIPRIMAHTFSELVIGFNLSNKENTSNSWNKDVLVLFSNSWCSFCQRMEMVVREVYRAIKGYVDMLNRGSQNVKENLNHVMMKLPEIYLLDCTLNDCDLILKSVDQREVYPALILFPAEKKQPLLYEGDMAVIDVMKFVAEHGSNFHQLIRDKVAVLWVSEGAVKNQNLHDTLQTDIHPESLHSRNKYHGAPGPDRMLDQVVRPNLMNSPASNELHEASPHVVIGSVLIATEKLLGVHPFDGSKILIVAANQVTGFQGLILNKHIQWSFLPKLEEGLENLKEAPLSLGGPVMKTGMPLLSLTRTVSGNNLPEIIPGIYFLDQVTTIRKIEELKSANQPVGDYWFFLGYSSWGWNQLYDEMAEGAWNLSEDATRNLNWP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
