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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35520.1 | AT | MUTL protein homolog 3 | JGI | N/A | IEA |
| GO:0006298 | GO-bp | mismatch repair | EnsemblGenomes | N/A | IEA |
| GO:0006298 | GO-bp | mismatch repair | JGI | N/A | IEA |
| GO:0007131 | GO-bp | reciprocal meiotic recombination | EnsemblGenomes | N/A | IEA |
| GO:0000795 | GO-cc | synaptonemal complex | EnsemblGenomes | N/A | IEA |
| GO:0005712 | GO-cc | chiasma | EnsemblGenomes | N/A | IEA |
| GO:0032300 | GO-cc | mismatch repair complex | EnsemblGenomes | N/A | IEA |
| GO:0032389 | GO-cc | MutLalpha complex | EnsemblGenomes | N/A | IEA |
| GO:0003697 | GO-mf | single-stranded DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016887 | GO-mf | ATPase activity | EnsemblGenomes | N/A | IEA |
| GO:0030983 | GO-mf | mismatched DNA binding | EnsemblGenomes | N/A | IEA |
| KOG1978 | KOG | DNA mismatch repair protein - MLH2/PMS1/Pms2 family | JGI | N/A | IEA |
| PTHR10073 | Panther | DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) | JGI | N/A | IEA |
| PTHR10073:SF7 | Panther | DNA MISMATCH REPAIR PROTEIN MLH3 | JGI | N/A | IEA |
| PF02518 | PFAM | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | JGI | N/A | IEA |
| PF08676 | PFAM | MutL C terminal dimerisation domain | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| MLH3 | MutL Homolog 3 |
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Glyma.11G086300 not represented in the dataset |
Glyma.11G086300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g158400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g086300 | Wm82.a4.v1 | ISS | As supplied by JGI |
>Glyma.11g086300.1 sequence-type=CDS polypeptide=Glyma.11g086300.1.p locus=Glyma.11g086300 ID=Glyma.11g086300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGAGCATAAAGTTATTGTCGGAGGCTGTGCGTAGCTCACTGCGTTCGGGCATTTTCCTCGTCGACTTCACGCGTGTCGTCGAGGAACTAGTTTTCAATAGCCTCGATGCTCGTGCCACAAAGGGAGAGACAGAGAAGTTAAAAGTATCGGTGTTTGTTAGTACTGGGAGCTGCTATTTGAAAGTTGTTGATGATGGAAGTGGAATCCCTCGAGATGGGATGGAAATGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAATTTGGTTGACCTGAATGCCTCGAGTGAGAACTTCGGTTTTCGCGGGGAAGTTTTAGCTTCCATATCTGAAGTCTCTTTGCTGGAAATTGTGACGAAAACATATGGAAGGCCAAATGGATATCGAAAAGTATTGAAGGGGTGCAAGTGCTTATATCTTGGTATTGATGATGATAGAAAGGAAATGGGCACCACAGTTGTTATCCGTGATTTATTTTACAACCAACCAGTTCAGAGAAAATACATGCAATCCAGTCCCAATAAGGTACTGCAATCAATCAAGAACTGTGTAGTGTGGCTTGCACTCGTGTGCCCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATGAGCTCTTTTGCACCCATTCTGCTTCTTCTCCTCTGTCACTTGTAACCAGTGGCTTTGGAGTAGAAGTCACAAGCTCTCTTCACAATTTAGAAGTTGAGAATGATATCATAAAGCTTTCTGGATATATATCTGGTCCTTGCAATACTGTGGATACGAAGGTGACTCATATTTCTAATTTAAAAAATGCCAACTCACAATTTGTTTGCAAGGGCCCAGTTCACAAGCTTATGCGTCAACTGGCTAATAGGTTTGAGCATCTGAACTCATGGAATACTGATGAAGAGTTCCAAAACAAGAAGAGAACCAGGTGTCAACCATGTCCAGCTTATCTCTTGAATTTGAGTTGCCCCCGATCTTTGTATGATTTGGCCTTTGAGCCATCAAAAACTGTTAAATTTAAGGATTGGGCTCCTATACTAAACTTCATTGTGAAGGCCATCAAACAATTCTGGGAGGAAAACGTAGCTTGTGACAATCTAATTGAAGGTGACTGTCATCAATCCAACAGGGAAGATGTTGATTACTTAGGGGTCACAATTTTCAAAGAGAAACAAAGTAAGGGAGACTTTCTTCTTCAGACTGGTTATTCTGGCAACTTATTGGATGGTTCTTATGCCAAGTGCACGTCCACTGTGATGAGAAAGCATAATAGTTTGTTGATGCATAATAGCAATAGCTTATTGGAAGGTGATAACTTTTTTGATGGTGAAATTCCTGCTGTAGAAAGTTTCAACATTGATGTACCTTTTGATGCACCGAGTTCTTCACATGGAAGAAGATTCCATAAAGTAGAAGCTGATGTGATCAATGAATCATTTGAAGATGATTTGCTTTATAATAGCTGCAGTGGGTATGGTTATGATGTAAAGATTAATGAGGATTTGCAACAACCTTTTCTAAAGAGATGCTCTACGCTAGGAAGTATCCTGCATGAGAAGGCTTTGTTTGTAAATGATGAATATGAACTCCAAACTGATAGCTTTTGGAGCAAGCAGAATGCAGAGGAGGATTATAGAAGTGGTAAGGATTTATATGCCCATCCCTGTCCAGAAGTCACAAAAAAGTTAAAGATGTCTAAAGATTCTGATTTCCTCGTTAGAGCATTGTCTGAAGAAAATTGTCTCCCTCCAGATTTATGCTATTCAGCATTACAAATAGGAAGCTCTGGGTCAGATGATCAGTTGTTAAATTTTGAATGGCATCCTGACTACCAAAAACCCTCATCTCAAGCATCTGCATTGGGTGTTTGTCATACAACTGATATTGAAGATGACCTAGGAGAAATATCTAGATACTATAAAAGGATCCATCATACAAAAGGAAAATTGATCTCTAGGGGTGTGCAAGATTCCCTAGATTATGGGACTAAATGGAGGAACTGCTCACCCAAAATTACAAAGAATGATAAACTGGCTAACATTCAAAGTCAAAACAATATTCTTGACATTTCTTCTGGATTCTTGCATCTTGCTGGAGACTCATTGATTCCTGAAACTATCAGTAAGAAATGCCTTGAGGATGCTAAAGTTCTGCATCAGGTGGATAAAAAGTTCATTCTAGTTGTGGCTGGCAGAACCCTTGCTGTTATTGATCAGCATGCTGCAGATGAAAGAATCAGACTGGAAGAATTGTGTCAAAAGGTATTGTCAGGAGAAGCAAAAGCAATAACCTATCTAGGTGCTGAACAGGAACTGGTATTGCCGGAGATTGGTTATCAACTACTTCATAGTTATAGGGTCAAATTAAATGATGTTGATCTTTTAGAATTTCTTCAGCAGGTTGCTGACACTGATGGATCATCAACAATGCCACCATCTGTCTTACGAGTGCTAAATTTGAAAGCATGCAGAGGTGCAATTATGTTTGGGGACTCATTGCTACCATCAGAATGCTCCTTTATAGTTGAAGAGCTAAAACATACATCGCTTTGTTTCCAATGTGCTCATGGGCGACCAGCAACTGTTCCTCTAGTCAACTTGGAGGCACTGCATAATCAGATAGCCAAGCTTCGACTGATGAATGAGTGTTCAAGTGACGAGTGCCATGGATTACGTAGACATACAGTACGCGTTGAACGTGCAGCACAGCGTTTAAATTCTGCTAGAGGAATTTGA
>Glyma.11g086300.1.p sequence-type=predicted peptide transcript=Glyma.11g086300.1 locus=Glyma.11g086300 ID=Glyma.11g086300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASIKLLSEAVRSSLRSGIFLVDFTRVVEELVFNSLDARATKGETEKLKVSVFVSTGSCYLKVVDDGSGIPRDGMEMVGERYATSKFLNLVDLNASSENFGFRGEVLASISEVSLLEIVTKTYGRPNGYRKVLKGCKCLYLGIDDDRKEMGTTVVIRDLFYNQPVQRKYMQSSPNKVLQSIKNCVVWLALVCPNISFKVVDIEREDELFCTHSASSPLSLVTSGFGVEVTSSLHNLEVENDIIKLSGYISGPCNTVDTKVTHISNLKNANSQFVCKGPVHKLMRQLANRFEHLNSWNTDEEFQNKKRTRCQPCPAYLLNLSCPRSLYDLAFEPSKTVKFKDWAPILNFIVKAIKQFWEENVACDNLIEGDCHQSNREDVDYLGVTIFKEKQSKGDFLLQTGYSGNLLDGSYAKCTSTVMRKHNSLLMHNSNSLLEGDNFFDGEIPAVESFNIDVPFDAPSSSHGRRFHKVEADVINESFEDDLLYNSCSGYGYDVKINEDLQQPFLKRCSTLGSILHEKALFVNDEYELQTDSFWSKQNAEEDYRSGKDLYAHPCPEVTKKLKMSKDSDFLVRALSEENCLPPDLCYSALQIGSSGSDDQLLNFEWHPDYQKPSSQASALGVCHTTDIEDDLGEISRYYKRIHHTKGKLISRGVQDSLDYGTKWRNCSPKITKNDKLANIQSQNNILDISSGFLHLAGDSLIPETISKKCLEDAKVLHQVDKKFILVVAGRTLAVIDQHAADERIRLEELCQKVLSGEAKAITYLGAEQELVLPEIGYQLLHSYRVKLNDVDLLEFLQQVADTDGSSTMPPSVLRVLNLKACRGAIMFGDSLLPSECSFIVEELKHTSLCFQCAHGRPATVPLVNLEALHNQIAKLRLMNECSSDECHGLRRHTVRVERAAQRLNSARGI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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