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Report for Sequence Feature Glyma.11G055700

Feature Type:gene_model
Chromosome:Gm11
Start:4207710
stop:4216150
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11G055700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67030.1AT zeaxanthin epoxidase (ZEP) (ABA1) JGI N/AIEA
GO:0009688GO-bp abscisic acid biosynthetic process EnsemblGenomesN/AIEA
GO:0044550GO-bp secondary metabolite biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0004497GO-mf monooxygenase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0009540GO-mf zeaxanthin epoxidase [overall] activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0071949GO-mf FAD binding EnsemblGenomesN/AIEA
KOG2614 KOG Kynurenine 3-monooxygenase and related flavoprotein monooxygenases JGI N/AIEA
PTHR13789Panther MONOOXYGENASE JGI N/AIEA
PTHR13789:SF10Panther JGI N/AIEA
PF00498PFAM FHA domain JGI N/AIEA
PF01494PFAM FAD binding domain JGI N/AIEA
CAROTENOID-PWYSoyCyc9 superpathway of carotenoid biosynthesis in plants Plant Metabolic Network ISS
PWY-5945SoyCyc9 violaxanthin, antheraxanthin and zeaxanthin interconversion Plant Metabolic Network ISS
GN7V-68431SoyCyc9-rxn Zeaxanthin epoxidase Plant Metabolic Network ISS

Proteins Associated with Glyma.11G055700
LocusGene SymbolProtein Name
ZEP zeaxanthin epoxidase
ABA1 Abscisic acid 1

Expression Patterns of Glyma.11G055700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11G055700 not represented in the dataset
Glyma.11G055700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11G055700
ParalogEvidenceComments
Glyma.01g186200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11G055700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g055700 Wm82.a4.v1ISS As supplied by JGI
Glyma11g05960 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11G055700
>Glyma.11g055700.1 sequence-type=CDS polypeptide=Glyma.11g055700.1.p locus=Glyma.11g055700 ID=Glyma.11g055700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCCTACCTTGACATGCAACTCTTTCAATCACTCAATGGCAGTTTTCTCAAAAACCCATTTCTCAATTCCCATGTTGAAAGAGCTTTCACTGGATACTTCACCTTGTGTCAGTCATGGAAGCAGAACAACAAAGCAAAGGAACACACTGATGCCAATCAAAGCATCAGTGGCAGAGGTTCCCCCTGCTGTTAGGAAAACTGTGGATGAAAATGAAGGAGGAGGGGATGGTGCCTCTCAGAAGAAGAAGCTCAGGGTACTTGTGGCTGGTGGAGGGATTGGTGGCTTGGTGTTTGCTTTGGCTGCAAAGAGGAAAGGGTTTGAAGTGGTGGTGTTTGAGAAGGATATGAGTGCTATAAGAGGGGAGGGGCAGTATAGGGGTCCAATTCAGATACAAAGCAATGCTTTGGCTGCTTTGGAAGCTATAGATTTGGAGGTTGCTGAAGAAGTTTTGAGAGTTGGTTGTATCACGGGTGATAGGATCAATGGGCTTGTGGATGGGATTTCTGGTTCTTGGTACATCAAGTTTGATACATTCACTCCTGCAGCAGAGCGTGGGCTTCCAGTCACTAGAGTTATTAGTCGAATGGCTTTACAAGAAATTCTTGCTCATGCAGTTGGGGAAGATGTCATTATGAATGACAGTAATGTTGTTGATTTTGTTGATCATGGAGACAAGGTAACAGTGGAGCTGGAGAATGGTCAGAAATATGATGGAGATCTATTGGTTGGAGCAGATGGGATATGGTCCAAGGTGAGGAAAAAGTTATTTGGCCAAACAGAAGCTACTTACTCTGGCTATACTTGTTACACTGGTATTGCAGATTTTGTGCCTGCGGACATTGAATCTGTTGGGTACCGAGTATTCTTAGGACATAAACAATACTTTGTATCTTCGGATGTTGGTGCTGGAAAGATGCAATGGTATGGATTTCACCAAGAACCTGCTGGTGGTGCTGATATCCCCAATGGAAAAAAGGAAAGATTGCTTAAGATATTCAAGGGTTGGTGTGATAACGTAATTGATTTGATACATGCCACAGAAGAAGAGGCAATTCTTCGACGAGACATATATGACAGGACGCCAACATTTACATGGGGAAAGGGCCATGTCACCTTGCTTGGTGATTCTATCCATGCCATGCAGCCAAATATGGGCCAAGGAGGATGCATGGCTATTGAGGACAGTTATCAACTTGCATTAGAGTTGGACAATGCATGGCAACAAAGTATCAAATCAGGCTCTCCAATTGACATTGATTCTTCCTTAAAGAGCTATGAGAGAGAAAGAAGATTAAGAGTTGCCATTGTTCATGGAATGGCTAGAATGGCAGCTATGATGGCTTCCACCTACAAGGCATATCTTGGTGTTGGTCTTGGGCCATTAGAGTTTTTGACCAAGTTTCGGATACCACATCCTGGAAGAGTTGGAGGAAGGTTTTTTATTGACAAGATGATGCCTTTGATGTTGAACTGGGTATTAGGTGGCAATAGCTCCAAACTTGAAGGCAGACCAGTATGTTGCAGGCTCTCAGACAAAGCAAACGACCAGTTACACAGATGGTTTGAAGACAATGATGCACTTGAGCGTGCCATTAATGGAGAGTGGATTTTATTACCATGTGGAGATGAAGCAGGTCCTACAAAACCTATATGTCTAACTCAAGATGAGATGAAACCCTGCATAATCGGGAGCATGCAGCAAAAAGATCATCCAGGCAGTTCAATTATAATACCTTTACCCCAGGTTTCTCAAATGCATGCAAGAATTAACTATAAGGATGGCGCCTTCTTCTTGACTGATTTGAGGAGTCTACATGGCACCTGGATCACAGACAATGAAGGAAGACGGTACAGGGTGCCTCCAAATTATCCTGCTCGCGTCCGTCCATCTGATGTGGTTGAGTTTGGTTCTGATAAGGCTTCATACCGTGTTAAGGTGACAAGATCTGCTTCAAGTGAGTCTGAAAAGGAAGGAACAAAACTTTATCAGAAAGTATGA
Predicted protein sequences of Glyma.11G055700
>Glyma.11g055700.1.p sequence-type=predicted peptide transcript=Glyma.11g055700.1 locus=Glyma.11g055700 ID=Glyma.11g055700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPTLTCNSFNHSMAVFSKTHFSIPMLKELSLDTSPCVSHGSRTTKQRNTLMPIKASVAEVPPAVRKTVDENEGGGDGASQKKKLRVLVAGGGIGGLVFALAAKRKGFEVVVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLEVAEEVLRVGCITGDRINGLVDGISGSWYIKFDTFTPAAERGLPVTRVISRMALQEILAHAVGEDVIMNDSNVVDFVDHGDKVTVELENGQKYDGDLLVGADGIWSKVRKKLFGQTEATYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYGFHQEPAGGADIPNGKKERLLKIFKGWCDNVIDLIHATEEEAILRRDIYDRTPTFTWGKGHVTLLGDSIHAMQPNMGQGGCMAIEDSYQLALELDNAWQQSIKSGSPIDIDSSLKSYERERRLRVAIVHGMARMAAMMASTYKAYLGVGLGPLEFLTKFRIPHPGRVGGRFFIDKMMPLMLNWVLGGNSSKLEGRPVCCRLSDKANDQLHRWFEDNDALERAINGEWILLPCGDEAGPTKPICLTQDEMKPCIIGSMQQKDHPGSSIIIPLPQVSQMHARINYKDGAFFLTDLRSLHGTWITDNEGRRYRVPPNYPARVRPSDVVEFGSDKASYRVKVTRSASSESEKEGTKLYQKV*






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