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Report for Sequence Feature Glyma.11G013400

Feature Type:gene_model
Chromosome:Gm11
Start:929453
stop:931127
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11G013400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G71420.1AT Tetratricopeptide repeat (TPR)-like superfamily protein JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
PTHR24015Panther FAMILY NOT NAMED JGI N/AIEA

Proteins Associated with Glyma.11G013400
LocusGene SymbolProtein Name
PPR112 Psudo-Response Regulator gene 112

Expression Patterns of Glyma.11G013400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11G013400 not represented in the dataset
Glyma.11G013400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11G013400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g013400 Wm82.a4.v1ISS As supplied by JGI
Glyma11g01536 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11G013400
>Glyma.11g013400.1 sequence-type=CDS polypeptide=Glyma.11g013400.1.p locus=Glyma.11g013400 ID=Glyma.11g013400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATTTGGCTCTGGTGGTCAATATCATCCAAACACGGGCAATGTTAAGCCGGCTTGAGATAGTGATTGGACAACTGAAAGAGATGGGTTATGTGCCAGAGCTTAGCTTAGCCTTGTATGACACGGAAGTGGAGCACAAAGAAGACCAATTGCTTCATCACAGTAAGAAGATGGCATTGGTATTTGCCATAATGAACGAAGGAATTAAAATAATGAAGAATATTCGTATTTGTGTGGATTGCCACAACTTCATGAAATTAGCATCATATCTATTTCAGAAGGAGATTGCTGCGAGAGATTCAAACTGTTTTCACCATTTCAAATATGCAGCATGCTCTTGTAATGACTATTGGTAA
Predicted protein sequences of Glyma.11G013400
>Glyma.11g013400.1.p sequence-type=predicted peptide transcript=Glyma.11g013400.1 locus=Glyma.11g013400 ID=Glyma.11g013400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNLALVVNIIQTRAMLSRLEIVIGQLKEMGYVPELSLALYDTEVEHKEDQLLHHSKKMALVFAIMNEGIKIMKNIRICVDCHNFMKLASYLFQKEIAARDSNCFHHFKYAACSCNDYW*






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