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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G50480.1 | AT | 10-formyltetrahydrofolate synthetase | JGI | N/A | IEA |
| GO:0009113 | GO-bp | purine nucleobase biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009257 | GO-bp | 10-formyltetrahydrofolate biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009396 | GO-bp | folic acid-containing compound biosynthetic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004329 | GO-mf | formate-tetrahydrofolate ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0004329 | GO-mf | formate-tetrahydrofolate ligase activity | JGI | N/A | IEA |
| GO:0004477 | GO-mf | methenyltetrahydrofolate cyclohydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0004488 | GO-mf | methylenetetrahydrofolate dehydrogenase (NADP+) activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| PTHR24508 | Panther | JGI | N/A | IEA | |
| PTHR24508:SF8 | Panther | JGI | N/A | IEA | |
| PF01268 | PFAM | Formate--tetrahydrofolate ligase | JGI | N/A | IEA |
| PWY-2161 | SoyCyc9 | folate polyglutamylation | Plant Metabolic Network | ISS | |
| PWY-3841 | SoyCyc9 | folate transformations II | Plant Metabolic Network | ISS | |
| GN7V-64060 | SoyCyc9-rxn | formate-tetrahydrofolate ligase | Plant Metabolic Network | ISS |
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Glyma.10g293800 not represented in the dataset |
Glyma.10g293800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.20g243700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g44010 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g293800.1 sequence-type=CDS polypeptide=Glyma.10g293800.1.p locus=Glyma.10g293800 ID=Glyma.10g293800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAATTCGTCAACTACAGTGAGGAAGTTGCAGGTGGTGTCCCCTGTTCCTGCGGACATAGACATTGCAAACTCCGTTGAACCAGTTCATATCTCCCAGATTGCCAAAGAGCTCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAGGTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTATGTTGTGGTCGGAGGCATTACTCCGACGCCTCTCGGGGAAGGCAAATCTACTACTACAGTGGGACTTTGTCAAGCTTTAGGTGCTTTTCTTGATAAAAAGGTAGTTACCTGCCTTCGTCAACCATCGCAAGGACCTACTTTTGGAATTAAAGGAGGCGCAGCTGGTGGTGGCTATAGCCAAGTTATTCCCATGGATGAATTCAATCTTCATCTAACAGGAGATATTCATGCAATAACTGCAGCAAACAATCTTCTAGCTGCTGCAATTGATACCCGAATTTTCCATGAGTCAACACAGTCAGATAAGGCTCTTTTTAACCGTTTGTGCCCTCCAAATAAAGAAGGGAAAAGGAGCTTTAGTGATGTCATGTTCAGGCGTCTTAAGAAGCTTGGTATTTCAAAGATCAATCCAGATGATCTTACACCAGATGAAGTAAATAAATTTGCTAGGCTTGATATTGACCCCAATTCTATCACATGGAGGAGAGTAATGGACATCAATGACCGATTCTTGAGAAAAATTACTATTGGCCAGGGACCTGACGAGAAAGGAATGGTGAGAGAAACAGGCTTTGATATTTCAGTTGCTAGTGAGATAATGGCTGTTTTGGCACTGACAACATCCTTAGCTGATATGCGAGAGAGGCTTGGGAAAATGGTTATTGGGAATAGCAGGAGTGGTGACCCTGTAACTGCTGATGATCTAGGTGTTGGAGGTGCTTTAACAGTTTTAATGAAGGATGCCATTCACCCTACCCTTATGCAGACTCTGGAAGGAACTCCTGTTCTTGTTCATGCAGGTCCATTTGCAAATATTGCTCATGGGAATTCTTCTATTGTGGCTGATAAGATTGCACTAAAGTTAGTTGGACCAGGTGGATTTGTAGTTACTGAAGCTGGTTTTGGTGCTGATATTGGAGCTGAAAAGTTTATGAACATTAAGTGTCGTTATAGTGGTTTGACACCTCAATGTGCGATTATTGTGGCAACTATAAGAGCACTAAAAATGCATGGTGGAGGGCCTGCAGTTGTTGCTGGAAAACCTCTTGACCATGCATATTTGACTGAAAATGTTGCCCTGGTTGAGGCTGGTTGTGTGAATATGGCACGACATATATCAAATACAAAGTCTTACGGTGTAAATGTTGTAGTTGCTATCAACAAGTTTTCAACTGACACTGAAGCTGAGCTAAATGCAGTTCAGAGTGCTGCATTAGCTGCTGGAGCTTATGATGCTGTAATTTGTACCCATCATGCGCACGGTGGCAAAGGAGCTGTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCAAGAATGTGACACAGCCATTGAAGTTCCTGTATCCTGTTGAACTGAGTATAAAAGAGAAAATAGAGGCAATAGCAAAGTCATATGGAGCCAGGGGTGTTGAGTACTCAGAACAGGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAATCTGCATGGCTAAGACTCAGTATTCTTTCTCAGACAATGCTGCAGCAAAGGGAGCTCCAAGTGGGTTTGTCTTGCCCATAAGGGATGTTAGAGCTAGTATAGGCGCTGGATTTATTTATCCTTTAGTTGGAACAATGAGTACGATGCCAGGGCTTCCAACAAGGCCATGCTTCTATGACATTGGTCTTGATACAACAACTGAAAAAGTCATTGGTCTCTCTTAA
>Glyma.10g293800.1.p sequence-type=predicted peptide transcript=Glyma.10g293800.1 locus=Glyma.10g293800 ID=Glyma.10g293800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNSSTTVRKLQVVSPVPADIDIANSVEPVHISQIAKELNLSPNHYDLYGKYKAKVLLSVLDELQGSEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALFNRLCPPNKEGKRSFSDVMFRRLKKLGISKINPDDLTPDEVNKFARLDIDPNSITWRRVMDINDRFLRKITIGQGPDEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSRSGDPVTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAIIVATIRALKMHGGGPAVVAGKPLDHAYLTENVALVEAGCVNMARHISNTKSYGVNVVVAINKFSTDTEAELNAVQSAALAAGAYDAVICTHHAHGGKGAVDLGIAVQKACKNVTQPLKFLYPVELSIKEKIEAIAKSYGARGVEYSEQAEKQIEMYSKQGFSGLPICMAKTQYSFSDNAAAKGAPSGFVLPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIGLDTTTEKVIGLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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