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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13680.1 | AT | IKI3 family protein | JGI | N/A | IEA |
| GO:0002098 | GO-bp | tRNA wobble uridine modification | EnsemblGenomes | N/A | IEA |
| GO:0006351 | GO-bp | transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006400 | GO-bp | tRNA modification | EnsemblGenomes | N/A | IEA |
| GO:0006979 | GO-bp | response to oxidative stress | EnsemblGenomes | N/A | IEA |
| GO:0008283 | GO-bp | cell proliferation | EnsemblGenomes | N/A | IEA |
| GO:0008284 | GO-bp | positive regulation of cell proliferation | EnsemblGenomes | N/A | IEA |
| GO:0009737 | GO-bp | response to abscisic acid | EnsemblGenomes | N/A | IEA |
| GO:0009787 | GO-bp | regulation of abscisic acid-activated signaling pathway | EnsemblGenomes | N/A | IEA |
| GO:0009965 | GO-bp | leaf morphogenesis | EnsemblGenomes | N/A | IEA |
| GO:0010928 | GO-bp | regulation of auxin mediated signaling pathway | EnsemblGenomes | N/A | IEA |
| GO:0031538 | GO-bp | negative regulation of anthocyanin metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0035265 | GO-bp | organ growth | EnsemblGenomes | N/A | IEA |
| GO:0048530 | GO-bp | fruit morphogenesis | EnsemblGenomes | N/A | IEA |
| GO:0071215 | GO-bp | cellular response to abscisic acid stimulus | EnsemblGenomes | N/A | IEA |
| GO:0080178 | GO-bp | 5-carbamoylmethyl uridine residue modification | EnsemblGenomes | N/A | IEA |
| GO:2000024 | GO-bp | regulation of leaf development | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0033588 | GO-cc | Elongator holoenzyme complex | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| KOG1920 | KOG | IkappaB kinase complex, IKAP component | JGI | N/A | IEA |
| PTHR12747 | Panther | IKAPPAB KINASE COMPLEX-ASSOCIATED PROTEIN | JGI | N/A | IEA |
| PF04762 | PFAM | IKI3 family | JGI | N/A | IEA |
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Glyma.10g289800 not represented in the dataset |
Glyma.10g289800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g43570 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g289800.1 sequence-type=CDS polypeptide=Glyma.10g289800.1.p locus=Glyma.10g289800 ID=Glyma.10g289800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGAACTTGAAGGTGTTTGGGGAGGTTCCCTTGGGACTCTCCCTTGACTCTAACGAGGAAACTATAGGGTTTTGCAGCTTCGACATCGAACGCAACCGCATCTTCTTCCTCTCTTCCCACAATCTCATTTACACTTCCCATCTCTCCTCTTTCCACGAGAACGCCGTTTGGAGCCCTAACGCCTCGCTCTCCTCCTCCGATGCTGTTACCGTCGATCTCGAACCCGGAGACGCCGTTACCTCCTTCGACTACCTCATGGAGAAAGAAGCGCTTCTTCTCGGAACCTCCAACGGCCTTCTCTTGCTCCACAACGTCGACGACGCCTCCGACGCGACGCAAGTCGTTGGCAAGCTCGACGGCGGCGTCAATGCAGTTTCCCTCAGCCCTGACGGAGAACTCGTCGCCGTAACCACCGGTTTCGGGCAGCTTTTGGTGATGACTCACGATTGGGACGTGTTGTACGAAACATCACTCCACGATGATGATGTTCCCGTAAGTGAAGGGGAGTTTCTTCCCGTGTCTTGGCGAGGAGATGGGAAATACTTTGCTACGATGAGTGATGCGTGTGGTTCTGGTTCGTTGCTTAAGAAAATTAAGGTTTGGGATCGAGATTCAGGGGATTTGCTTGCTTCTTCGGAGCTGAGAAGTTTTGCTGGGGCAGTTTTGGAGTGGATGCCCAGTGGTGCTAAAATTGCAGCTGTTTGTGATGGGAAAGATGGAAATGAATCTCCCTCTGTTGTTTTCTTTGAGAGGAATGGATTAGAGAGAAGCAGGTTTAGTGTCGATTCGAAAGTTAAACTTCTCAAGTGGAATTGCAGTTCTGATCTTCTCGCAGGTGTTGTTGAATGTGAAAATTATGATGCTGTAAGGATATGGTGTTTTAGTAATAACCACTGGTACCTGAAGCATGAAATTAGATACTTGAAGCGAGATGAAGTTAGCTTCATTTGGAATCCGACGAAGCAGCTGCAGTTAATTTGTTGGACTGTTGGTGGTCAGGTCACAGTTTCTAACTTTATTTGGATCACGGCTGTTATGGAGAATTCTGTTGCACTGGTTGTCGATGGCTCCAATATTCATGTAACGCCACTGTCCTTGTCCTTAATGCCACCTCCTATGTATTTATTTAGCTTGAAATTTTCTTCTCATGTCCGGGGTATGGCAGTGTATTGCAAACACTCTAAGAACCAGTTAGCTGCGTTTCTTTCAAATGGTAGCTTATGTGTTGTGGAGCTTCCATCAATTGAAACCTGGGAAGAACTAGAGGGGAAAGAATTCAGTGTTGAAGACTCTCATACAGAAATGGCATTTGGATCCATTTTACATCTTGAATGGTTGGATTCCCATAAGCTATTAGCCATTTCACATTATGGTTTTAGTCATAGTAATGACTTATTTCAAACCTCATTGACTGAGGGTGGACTTCGAGGCTTCTATTTGCAGGAAGTGGAACTTGAATGTTCTGAGGATCTTGTTCCAGGATTGCTGACATGCTCAGGCTGGCATGCAGCAGTTTCAAATCGAAATACCCTTGAAGAGCTGGTTATTGGCATCGCTTCCAATCCTGCTAGTAAACACTCTGCATATATTCAGTTTTCTAGGGGGGAAATCCAAGAGTATGTATCAAAAATTGGGATTAGTAGAGGATCTCTAGAACAAGAACATCAAGGTTTTTCTGCAGCTTGCCCTTGGATGAGTGTAGCGTTAGTTGGCAGTGCTGGCCTATCAAAATCAGTGCTTTTTGGACTGGATGAGATTGGCAGACTGCATGCTAATGCGGGGATACTTTGCAACAACTGCAGCAGCTTCTCATTTTACTCAAATTTGGCTGACCAAGTGATCACACATCTAATCCTTGCAACTAAACAAGATTTGCTTTTTATTGTTGACATTGCAGATGTATTTAATGGGGAGTTAGACTCAAAGTACAGTAACTTTGTCCGCATTAACAGTAGAAAAAAAGAAGAAAATGAAAGCTTCATAAATATATGGGAGAGAGGTGCTAAAATTGTTGGAGTTTTACATGGAGATGAAGCTGCCATTATACTGCAAACTACTCGGGGAAACCTAGAATGTATATGCCCTAGAAAGTTGGTTTTGGTTTCCATCATTAATGCATTAGTTCAAAAGCGCTTTAAAGATGCATTACTTATGGTTAGAAGGCATAGGATAAATTTCAATGTAATTGTTGATTACTGTGGCTGGCAAGCATTTTCACAATTAGCTTCTGAATTTGTCAGGCAGGTTAACAATCTGGGTTACATAACCGAGTTTGTTTGTTCCATAAAGAATGAAAATATTATAGAGAAACTCTATAAAAATCACATTTCTGTTCCCTGTCCAAAGGTTGCTGATGTTATGCTAGTTGGGGGCATCCAGAATTCTCTTGCTGGTAACAAGGTTTCTTCCGTTTTGATGGCTGTAAGAAAAGCACTTGAGGATCACATAACAGAAAGTCCTGCAAGGGAGCTTTGCATTTTGACCACTCTAGCTCAGAGTGATCCTCCATTACTTGAAGATGCTTTAAAGAGAATAAAAGTTATTCGTGAAAAGGAATTGTCTCATGCTGATGACCAGGGGAGAATGTCTTACCCTTCTGCTGAAGAAGCTTTGAAGCATCTTTTGTGGTTAGCTGACTCTGATGCTGTATATGAAGCTGCTTTGGGTCTTTATGATTTAAATCTTGCAGCTATTGTGGCATTGAATGCTCAGAAAGATCCAAAAGAGTTTCTTCCTTTCTTACAGGAATTGGAGCGTATGCCAACTCTATTAATGCAATATAATATTGACCTTAGGCTGAAAAGGTTTGAAAAGGCTCTCAGACACATTGCTTCTGCTGGAGATTCTTATTATGATGATTGTATGACACTCGTTAAAAAAAACCCTCTACTTTTTCCTTTGGCTCTTCAACTTTTTACTGGCCCTACCAAGCAGAAGCCATTCCTTGAGGCATGGGGGGATTATCTTAGTGATGAAAAATGCTTTGAAGATGCTGCGGCAATTTATATGTCCTGTTTCAATCTGGATAAGGCTCTGAAGTCTTATCGTGCTATTAATAACTGGAGTGGGGTGCTTACGGTTGCTGGGTTCCTTAATTTGGGAAAGGATGAGCTACTACATCTTGCCAGTGAGCTCTGTGAAGAACTTCAAGCACTAGGTAAACCTGGGGAGGCTGCCAAAATTGCCCTGGAGTACTGTGGAGATGTTAACACCGGTGTGAATTTGTTGATTACTGCAAGGGACTGGGAGGAGGCTTTGAGGGTTGTTTTTATGCATAGAAGAGAGGACTTAATTAAAACAGTGAAGAGTGCATCTTTGGAATGTGCAAGCACACTTACCAGTGAATATGAGGAAGGCTTAGAGAAAGTGGGGAAATACTTGGCACGTTACCTGGCTGTTCGACAGAGAAGATTACTTCTTGCAGCAAAGCTCCAGTCAGAGGAACGTGCAGCAAGTGATCTTGATGATGATGCTGCTTCAGAAACTAGCAGTAATTTTAGTGGAATGAGTGCATACACCACAGGGACCAAGAAAAGTTCTGCTGCTTCAATGAGCTCAACTGCGACTAGCAAGGCAAGAGAAACTAGGCGTCTGAAGAAGAGAGGAAAAATCCGTCCTGGGAGTCCTGATGAGGAGATTGCCTTGGTGGAGCATTTGAAAGGCATGTCCCTGACAGTGGAAGCTAAACGTGAGCTGAAATCTTTGTTGGTCTCCCTTATGATGTTTGGTGAGGGAGAAACATGTAAGAAGCTACAACAAACGGGGGAAAACTTTCAATTGTCTCAGATGGCAGCAGTCAAATTAGCTGAAGATACAATATCTAATGATACCATAAATGAGTATGCACATACGTTGGAGCAATATACCCAAAAAGTAAGGAATGAAATTCACAATTCAGAGGCTTTCTCGTGGCGGCTTAAAGTTTTTTTGTCCTATGAGTGA
>Glyma.10g289800.1.p sequence-type=predicted peptide transcript=Glyma.10g289800.1 locus=Glyma.10g289800 ID=Glyma.10g289800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKNLKVFGEVPLGLSLDSNEETIGFCSFDIERNRIFFLSSHNLIYTSHLSSFHENAVWSPNASLSSSDAVTVDLEPGDAVTSFDYLMEKEALLLGTSNGLLLLHNVDDASDATQVVGKLDGGVNAVSLSPDGELVAVTTGFGQLLVMTHDWDVLYETSLHDDDVPVSEGEFLPVSWRGDGKYFATMSDACGSGSLLKKIKVWDRDSGDLLASSELRSFAGAVLEWMPSGAKIAAVCDGKDGNESPSVVFFERNGLERSRFSVDSKVKLLKWNCSSDLLAGVVECENYDAVRIWCFSNNHWYLKHEIRYLKRDEVSFIWNPTKQLQLICWTVGGQVTVSNFIWITAVMENSVALVVDGSNIHVTPLSLSLMPPPMYLFSLKFSSHVRGMAVYCKHSKNQLAAFLSNGSLCVVELPSIETWEELEGKEFSVEDSHTEMAFGSILHLEWLDSHKLLAISHYGFSHSNDLFQTSLTEGGLRGFYLQEVELECSEDLVPGLLTCSGWHAAVSNRNTLEELVIGIASNPASKHSAYIQFSRGEIQEYVSKIGISRGSLEQEHQGFSAACPWMSVALVGSAGLSKSVLFGLDEIGRLHANAGILCNNCSSFSFYSNLADQVITHLILATKQDLLFIVDIADVFNGELDSKYSNFVRINSRKKEENESFINIWERGAKIVGVLHGDEAAIILQTTRGNLECICPRKLVLVSIINALVQKRFKDALLMVRRHRINFNVIVDYCGWQAFSQLASEFVRQVNNLGYITEFVCSIKNENIIEKLYKNHISVPCPKVADVMLVGGIQNSLAGNKVSSVLMAVRKALEDHITESPARELCILTTLAQSDPPLLEDALKRIKVIREKELSHADDQGRMSYPSAEEALKHLLWLADSDAVYEAALGLYDLNLAAIVALNAQKDPKEFLPFLQELERMPTLLMQYNIDLRLKRFEKALRHIASAGDSYYDDCMTLVKKNPLLFPLALQLFTGPTKQKPFLEAWGDYLSDEKCFEDAAAIYMSCFNLDKALKSYRAINNWSGVLTVAGFLNLGKDELLHLASELCEELQALGKPGEAAKIALEYCGDVNTGVNLLITARDWEEALRVVFMHRREDLIKTVKSASLECASTLTSEYEEGLEKVGKYLARYLAVRQRRLLLAAKLQSEERAASDLDDDAASETSSNFSGMSAYTTGTKKSSAASMSSTATSKARETRRLKKRGKIRPGSPDEEIALVEHLKGMSLTVEAKRELKSLLVSLMMFGEGETCKKLQQTGENFQLSQMAAVKLAEDTISNDTINEYAHTLEQYTQKVRNEIHNSEAFSWRLKVFLSYE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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