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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55400.1 | AT | methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) | JGI | N/A | IEA |
| GO:0006412 | GO-bp | translation | EnsemblGenomes | N/A | IEA |
| GO:0006418 | GO-bp | tRNA aminoacylation for protein translation | EnsemblGenomes | N/A | IEA |
| GO:0006418 | GO-bp | tRNA aminoacylation for protein translation | JGI | N/A | IEA |
| GO:0006431 | GO-bp | methionyl-tRNA aminoacylation | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0009570 | GO-cc | chloroplast stroma | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | JGI | N/A | IEA |
| GO:0004812 | GO-mf | aminoacyl-tRNA ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0004812 | GO-mf | aminoacyl-tRNA ligase activity | JGI | N/A | IEA |
| GO:0004825 | GO-mf | methionine-tRNA ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | EnsemblGenomes | N/A | IEA |
| KOG0436 | KOG | Methionyl-tRNA synthetase | JGI | N/A | IEA |
| PTHR11946 | Panther | ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES | JGI | N/A | IEA |
| PTHR11946:SF1 | Panther | SUBFAMILY NOT NAMED | JGI | N/A | IEA |
| PF09334 | PFAM | tRNA synthetases class I (M) | JGI | N/A | IEA |
|
Glyma.10g289600 not represented in the dataset |
Glyma.10g289600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.20g099600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g43550 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g289600.2 sequence-type=transcript locus=Glyma.10g289600 ID=Glyma.10g289600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTCAGTATTTAGGGGTTAATATAACACTGAGATGAGATGTTAATGCTATCCGTTGAAAAGGATGGCCACGGCAAAAGGACACTCGTGAAGAAAACTGCAAAGCAGTGAAACCTGAGAATCTTCTGAATTGAGAAGAAGCCATGGCAGTGAGAATAAACTGCTCCATTCAAAACACCCTCTGTCTCCTTAACCCTCCCTTGTTTTCTCTTCGTTACAGAGCTTCTCCCCTGAAGCTGAAACCTCAACTGCATTTTCGTCAAAACCCCTCTCGAGGAGCTTTGTTTTGCACCTGCGCCACCACCGATATCACTCCACATAATACCGAACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGCGGCTATTGGGGAAGAAAGTTATATTTATTACTGGCACGGATGAACACGGGGAGAAAATTGCAACTGCTGCCATGGCTCAGGGTTCCACCCCTCCTGACCATTGCAATCTCATATCTCAATCTTACATGACGCTTTGGAAAGATTTAGATATTTCTTATGACAAGTTCATTAGAACAACTGATAGCAAGCATGAAGCAATTGTGAAGGAATTTTACTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGGATGAGAAGGAACTTCTTGATAATAATTGTTGTCCAGTTCACCTAAAGCCTTGTGTTTCAAGGAAAGAGGACAATTACTTTTTTGCACTGTCAAAATATCAGAAGGCATTGGAGGATACTCTGAATAAAAATCCGAATTTTGTGCAGCCATCTTTCCGTTTAAATGAGGTTCAAAGTTGGATCAACAGTGGCTTGAGGGACTTTTCCATTTCCCGAGCATCAGTTGATTGGGGCATTCCTGTTCCCGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGCTATATATCAGCACTATCTGATGATCAGGAACAACCTGATTTACTAAAAACTGTTTCTTCAGGTTGGCCAGCTTCACTGCACTTGATTGGTAAGGATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGGATGGCATGAAGATGGGCAAGTCACTAGGGAATACACTTGAACCAAACGATTTGGTTAATAAATTTGGGACAGATGCAGTTAGATACTTCTTTGTCAGAGAGGTGGAATTCGGCAATGATGGAGACTATTCAGAGGAACGCTTCATCAATATTGTGAATGCACATCTTGCCAATACAATTGGAAATCTTCTTAATCGGACACTGGGACTTCTGAAAAAGAACTGCCAATCAATTCTGGTGGTGGATTCCACTACAGCTGCTGAAGGAAATGAATTCAAGGACAATGTAGAGAAGCTGGTTGATAAAGTTCGCATTCACTATGAAAATCTCTCCCTGTCATCAGCTTGTGAGGCTGCTCTGGAGATTGGTAATGTTGGGAATTTGTATATGGATCAACGTGCACCATGGTCTCTCTTTAAGCAAGGGGGTACTGCTGCTGAAGCAGCTGCTAAGAGAGACACCGAGTGGGGTGGGCTTAAGGGTGGCCAAGTCATGGCTCAACCTAAACCAGTCTTTGCCAGGATTGAAAACCAAACTGAAGTGGAAGACAAAGGAGTCGCAGTTGGAAAGACTAAGAAAAGCAAAGCGAAGCCGAAACAGCCTCAAGAAGTCGTCGGAGCCTAGATACCCATTTTTGACATTTTCCCCTTTTCTGAATTGTTAATGTTTTCACCAAGTTCAGCTTCATGTAAAACTAATTCTTTTGTTAATTTATGTACACGAATATTTTGATACATACATGCGCAAGAAGGTATTTATGAGCACGAGGCATATGTGTATATGAATTTTGAATGGAAAAATTGTATTTCTTATTTTGGAAATAAAGTTAG
>Glyma.10g289600.1 sequence-type=CDS polypeptide=Glyma.10g289600.1.p locus=Glyma.10g289600 ID=Glyma.10g289600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGTGAGAATAAACTGCTCCATTCAAAACACCCTCTGTCTCCTTAACCCTCCCTTGTTTTCTCTTCGTTACAGAGCTTCTCCCCTGAAGCTGAAACCTCAACTGCATTTTCGTCAAAACCCCTCTCGAGGAGCTTTGTTTTGCACCTGCGCCACCACCGATATCACTCCACATAATACCGAACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGCGGCTATTGGGGAAGAAAGTTATATTTATTACTGGCACGGATGAACACGGGGAGAAAATTGCAACTGCTGCCATGGCTCAGGGTTCCACCCCTCCTGACCATTGCAATCTCATATCTCAATCTTACATGACGCTTTGGAAAGATTTAGATATTTCTTATGACAAGTTCATTAGAACAACTGATAGCAAGCATGAAGCAATTGTGAAGGAATTTTACTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGGATGAGAAGGAACTTCTTGATAATAATTGTTGTCCAGTTCACCTAAAGCCTTGTGTTTCAAGGAAAGAGGACAATTACTTTTTTGCACTGTCAAAATATCAGAAGGCATTGGAGGATACTCTGAATAAAAATCCGAATTTTGTGCAGCCATCTTTCCGTTTAAATGAGGTTCAAAGTTGGATCAACAGTGGCTTGAGGGACTTTTCCATTTCCCGAGCATCAGTTGATTGGGGCATTCCTGTTCCCGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGCTATATATCAGCACTATCTGATGATCAGGAACAACCTGATTTACTAAAAACTGTTTCTTCAGGTTGGCCAGCTTCACTGCACTTGATTGGTAAGGATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGGATGGCATGAAGATGGGCAAGTCACTAGGGAATACACTTGAACCAAACGATTTGGTTAATAAATTTGGGACAGATGCAGTTAGATACTTCTTTGTCAGAGAGGTGGAATTCGGCAATGATGGAGACTATTCAGAGGAACGCTTCATCAATATTGTGAATGCACATCTTGCCAATACAATTGGAAATCTTCTTAATCGGACACTGGGACTTCTGAAAAAGAACTGCCAATCAATTCTGGTGGTGGATTCCACTACAGCTGCTGAAGGAAATGAATTCAAGGACAATGTAGAGAAGCTGGTTGATAAAGTTCGCATTCACTATGAAAATCTCTCCCTGTCATCAGCTTGTGAGGCTGCTCTGGAGATTGGTAATGTTGGGAATTTGTATATGGATCAACGTGCACCATGGTCTCTCTTTAAGCAAGGGGGTACTGCTGCTGAAGCAGCTGCTAAGGACCTTGTAATTATATTAGAGACAGTGAGGATTATTGCAATTGCACTATTTCCTGTTACACCAAGCTTGAGTTGGAGAATATATGCCCAACTTGGCTATTCCAGGGACCAATTTGATGCAGCAACCTGGAGAGACACCGAGTGGGGTGGGCTTAAGGGTGGCCAAGTCATGGCTCAACCTAAACCAGTCTTTGCCAGGATTGAAAACCAAACTGAAGTGGAAGACAAAGGAGTCGCAGTTGGAAAGACTAAGAAAAGCAAAGCGAAGCCGAAACAGCCTCAAGAAGTCGTCGGAGCCTAG >Glyma.10g289600.2 sequence-type=CDS polypeptide=Glyma.10g289600.2.p locus=Glyma.10g289600 ID=Glyma.10g289600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGTGAGAATAAACTGCTCCATTCAAAACACCCTCTGTCTCCTTAACCCTCCCTTGTTTTCTCTTCGTTACAGAGCTTCTCCCCTGAAGCTGAAACCTCAACTGCATTTTCGTCAAAACCCCTCTCGAGGAGCTTTGTTTTGCACCTGCGCCACCACCGATATCACTCCACATAATACCGAACCCTTTGTCCTCACTACTCCTCTCTATTACGTCAATGCCCCTCCTCACATGGGTAGTGCTTACACCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGCGGCTATTGGGGAAGAAAGTTATATTTATTACTGGCACGGATGAACACGGGGAGAAAATTGCAACTGCTGCCATGGCTCAGGGTTCCACCCCTCCTGACCATTGCAATCTCATATCTCAATCTTACATGACGCTTTGGAAAGATTTAGATATTTCTTATGACAAGTTCATTAGAACAACTGATAGCAAGCATGAAGCAATTGTGAAGGAATTTTACTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGGATGAGAAGGAACTTCTTGATAATAATTGTTGTCCAGTTCACCTAAAGCCTTGTGTTTCAAGGAAAGAGGACAATTACTTTTTTGCACTGTCAAAATATCAGAAGGCATTGGAGGATACTCTGAATAAAAATCCGAATTTTGTGCAGCCATCTTTCCGTTTAAATGAGGTTCAAAGTTGGATCAACAGTGGCTTGAGGGACTTTTCCATTTCCCGAGCATCAGTTGATTGGGGCATTCCTGTTCCCGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGCTATATATCAGCACTATCTGATGATCAGGAACAACCTGATTTACTAAAAACTGTTTCTTCAGGTTGGCCAGCTTCACTGCACTTGATTGGTAAGGATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGGATGGCATGAAGATGGGCAAGTCACTAGGGAATACACTTGAACCAAACGATTTGGTTAATAAATTTGGGACAGATGCAGTTAGATACTTCTTTGTCAGAGAGGTGGAATTCGGCAATGATGGAGACTATTCAGAGGAACGCTTCATCAATATTGTGAATGCACATCTTGCCAATACAATTGGAAATCTTCTTAATCGGACACTGGGACTTCTGAAAAAGAACTGCCAATCAATTCTGGTGGTGGATTCCACTACAGCTGCTGAAGGAAATGAATTCAAGGACAATGTAGAGAAGCTGGTTGATAAAGTTCGCATTCACTATGAAAATCTCTCCCTGTCATCAGCTTGTGAGGCTGCTCTGGAGATTGGTAATGTTGGGAATTTGTATATGGATCAACGTGCACCATGGTCTCTCTTTAAGCAAGGGGGTACTGCTGCTGAAGCAGCTGCTAAGAGAGACACCGAGTGGGGTGGGCTTAAGGGTGGCCAAGTCATGGCTCAACCTAAACCAGTCTTTGCCAGGATTGAAAACCAAACTGAAGTGGAAGACAAAGGAGTCGCAGTTGGAAAGACTAAGAAAAGCAAAGCGAAGCCGAAACAGCCTCAAGAAGTCGTCGGAGCCTAG
>Glyma.10g289600.1.p sequence-type=predicted peptide transcript=Glyma.10g289600.1 locus=Glyma.10g289600 ID=Glyma.10g289600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAVRINCSIQNTLCLLNPPLFSLRYRASPLKLKPQLHFRQNPSRGALFCTCATTDITPHNTEPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIATAAMAQGSTPPDHCNLISQSYMTLWKDLDISYDKFIRTTDSKHEAIVKEFYSRVLANGDIYRADYDGLYCVNCEEYKDEKELLDNNCCPVHLKPCVSRKEDNYFFALSKYQKALEDTLNKNPNFVQPSFRLNEVQSWINSGLRDFSISRASVDWGIPVPDDKTQTIYVWFDALLGYISALSDDQEQPDLLKTVSSGWPASLHLIGKDILRFHAVYWPAMLMSAGLSLPKMVFGHGFLTKDGMKMGKSLGNTLEPNDLVNKFGTDAVRYFFVREVEFGNDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCQSILVVDSTTAAEGNEFKDNVEKLVDKVRIHYENLSLSSACEAALEIGNVGNLYMDQRAPWSLFKQGGTAAEAAAKDLVIILETVRIIAIALFPVTPSLSWRIYAQLGYSRDQFDAATWRDTEWGGLKGGQVMAQPKPVFARIENQTEVEDKGVAVGKTKKSKAKPKQPQEVVGA* >Glyma.10g289600.2.p sequence-type=predicted peptide transcript=Glyma.10g289600.2 locus=Glyma.10g289600 ID=Glyma.10g289600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAVRINCSIQNTLCLLNPPLFSLRYRASPLKLKPQLHFRQNPSRGALFCTCATTDITPHNTEPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIATAAMAQGSTPPDHCNLISQSYMTLWKDLDISYDKFIRTTDSKHEAIVKEFYSRVLANGDIYRADYDGLYCVNCEEYKDEKELLDNNCCPVHLKPCVSRKEDNYFFALSKYQKALEDTLNKNPNFVQPSFRLNEVQSWINSGLRDFSISRASVDWGIPVPDDKTQTIYVWFDALLGYISALSDDQEQPDLLKTVSSGWPASLHLIGKDILRFHAVYWPAMLMSAGLSLPKMVFGHGFLTKDGMKMGKSLGNTLEPNDLVNKFGTDAVRYFFVREVEFGNDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCQSILVVDSTTAAEGNEFKDNVEKLVDKVRIHYENLSLSSACEAALEIGNVGNLYMDQRAPWSLFKQGGTAAEAAAKRDTEWGGLKGGQVMAQPKPVFARIENQTEVEDKGVAVGKTKKSKAKPKQPQEVVGA*
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