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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23300.1 | AT | pyrimidine d | JGI | N/A | IEA |
| GO:0006207 | GO-bp | 'de novo' pyrimidine nucleobase biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006222 | GO-bp | UMP biosynthetic process | JGI | N/A | IEA |
| GO:0044205 | GO-bp | 'de novo' UMP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005743 | GO-cc | mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004152 | GO-mf | dihydroorotate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0004152 | GO-mf | dihydroorotate dehydrogenase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016627 | GO-mf | oxidoreductase activity, acting on the CH-CH group of donors | EnsemblGenomes | N/A | IEA |
| KOG1436 | KOG | Dihydroorotate dehydrogenase | JGI | N/A | IEA |
| PTHR11938 | Panther | FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE | JGI | N/A | IEA |
| PTHR11938:SF7 | Panther | DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL | JGI | N/A | IEA |
| PF01180 | PFAM | Dihydroorotate dehydrogenase | JGI | N/A | IEA |
| PWY-5686 | SoyCyc9 | UMP biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-7211 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY0-162 | SoyCyc9 | superpathway of pyrimidine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-51930 | SoyCyc9-rxn | dihydroorotate dehydrogenase (quinone) | Plant Metabolic Network | ISS |
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Glyma.10g286200 not represented in the dataset |
Glyma.10g286200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.20g103100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g43220 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g286200.1 sequence-type=CDS polypeptide=Glyma.10g286200.1.p locus=Glyma.10g286200 ID=Glyma.10g286200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCGCATGGTCTTCTAGAAAGTTACTGAGAGACGTTCTTCTCAAAAGGGTAGTCTCGAATCAACTTCCCGGCGTCAGATGTTTTTCTTCTGCGCCAAAAAGTGCTCCTAAGATCGGTCACTATTCCAAGAAAGGAAGGTTGTTGACAGGAGCCACCATAGGTCTACTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTGTGGATGGTTATTCTCGGCAACAAAACTTGTGAATCCCTTTTTTGCTTTGTTGGACCCTGAGTTTGCACACAACTTGGGTGTCTCGGCTGCAGCTCGTGGTTGGGTTCCAAGGGAGAAGAGGCCCGACCCATCAATCTTAGGGCTAGAAGTTTGGGGAAGAAAATTCTCCAACCCAGTAGGCCTTGCTGCAGGCTTTGATAAAAATGCTGAGGCTGTAGATGGTTTACTTGCTTTGGGCTTTGGCTTTGTGGAGGTAGGCTCTGTTACTCCTGTCCCCCAGGATGGCAATCCAAAACCTCGTATCTTCAGGTTGCGAAAAGAAGGTGCTGTAATAAATAGATGTGGCTTTAATAGTGAGGGAATTGTTGCTGTTGCAAAGCGACTAGGTGCTCAGCATGGCAAGAGGAAACTTGATGAAACTTCAAGCGCTTCACCTTCTTCCAATAATGAGGTCAAACATGGTGGAAAAGCTGGCCCTGGCATTCTTGGTGTCAATCTTGGAAAGAACAAGACAAGTGAAGATGCTGCAGCAGATTATGTTCAAGGAGTTCATACATTGTCCCAATATGCTGATTACCTGGTGATTAATGTTTCATCACCCAATACCCCTGGTTTGCGCATGCTTCAAGGAAGAAAGCAATTGAAGGATCTAGTGAAGAAGGTTCAAGCTGCTCGTGATGAAATGCAATGGGGTGAGGAGGGCCCACCTCCATTGCTGGTAAAAATAGCTCCAGATTTGTCAAAAGAAGACCTTGAAGATATTGCTGCAGTCGCCTTGGCTCTTCACTTGGATGGACTGATTATATCGAACACAACCATTTCAAGACCAGATCCTACCAGTAAAAATCCATTGGCTTCAGAAACTGGTGGCTTGAGTGGGAAGCCTCTCTTCAATCTCTCCACCAACATCTTGAAGGAGATGTATATCTTGACAAGGGGCAGGATTCCTTTGATTGGCTGTGGGGGCATTAGCAGTGGGGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTAGTTCAGCTCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGGCTGAATTAGCTGCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGATGCAGTTGGTGCAGATTGTAGATGA
>Glyma.10g286200.1.p sequence-type=predicted peptide transcript=Glyma.10g286200.1 locus=Glyma.10g286200 ID=Glyma.10g286200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAAWSSRKLLRDVLLKRVVSNQLPGVRCFSSAPKSAPKIGHYSKKGRLLTGATIGLLIAGGAYVSTVDEATFCGWLFSATKLVNPFFALLDPEFAHNLGVSAAARGWVPREKRPDPSILGLEVWGRKFSNPVGLAAGFDKNAEAVDGLLALGFGFVEVGSVTPVPQDGNPKPRIFRLRKEGAVINRCGFNSEGIVAVAKRLGAQHGKRKLDETSSASPSSNNEVKHGGKAGPGILGVNLGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALHLDGLIISNTTISRPDPTSKNPLASETGGLSGKPLFNLSTNILKEMYILTRGRIPLIGCGGISSGEDAYKKIRAGATLVQLYTAFAYGGPALIPQIKAELAACLERDGFKSIVDAVGADCR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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