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Report for Sequence Feature Glyma.10g278000

Feature Type:gene_model
Chromosome:Gm10
Start:50013484
stop:50015460
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g278000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12120.1AT fatty acid desaturase 2 JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0006631GO-bp fatty acid metabolic process EnsemblGenomesN/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0006636GO-bp unsaturated fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005789GO-cc endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
PTHR19353Panther FATTY ACID DESATURASE 2 JGI N/AIEA
PF00487PFAM Fatty acid desaturase JGI N/AIEA
PWY-5995SoyCyc9 linoleate biosynthesis I (plants) Plant Metabolic Network ISS
GN7V-46347SoyCyc9-rxn oleoyl-lipid 12-desaturase Plant Metabolic Network ISS

Proteins Associated with Glyma.10g278000
LocusGene SymbolProtein Name
FAD2-1 microsomal omega-6 desaturase
FAD2-1A omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1
FAD2-1A  fatty acid desaturase

Expression Patterns of Glyma.10g278000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g278000
ParalogEvidenceComments
Glyma.20g111000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g278000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g42470 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g278000
>Glyma.10g278000.2 sequence-type=transcript locus=Glyma.10g278000 ID=Glyma.10g278000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTATGACATGTAATTGAATTTTTTAATTATAAAAAATAATAAAACTTAATTACGTACTATAAAGAGATGCTCTTGACTAGAATTGTGATCTCCTAGTTTCCTAACCATATACTAATATTTGCTTGTATTGATAGCCCCTCCGTTCCCAAGAGTATAAAACTGCATCGAATAATACAAGCCACTAGGCATGGGTCTAGCAAAGGAAACAACAATGGGAGGTAGAGGTCGTGTGGCCAAAGTGGAAGTTCAAGGGAAGAAGCCTCTCTCAAGGGTTCCAAACACAAAGCCACCATTCACTGTTGGCCAACTCAAGAAAGCAATTCCACCACACTGCTTTCAGCGCTCCCTCCTCACTTCATTCTCCTATGTTGTTTATGACCTTTCATTTGCCTTCATTTTCTACATTGCCACCACCTACTTCCACCTCCTTCCTCAACCCTTTTCCCTCATTGCATGGCCAATCTATTGGGTTCTCCAAGGTTGCCTTCTCACTGGTGTGTGGGTGATTGCTCACGAGTGTGGTCACCATGCCTTCAGCAAGTACCAATGGGTTGATGATGTTGTGGGTTTGACCCTTCACTCAACACTTTTAGTCCCTTATTTCTCATGGAAAATAAGCCATCGCCGCCATCACTCCAACACAGGTTCCCTTGACCGtgatgaagtgtttgtcccaaaaccaaaatccaaagttgcatggttttccaagtACTTAAACAACCCTCTAGGAAGGGCTGTTTCTCTTCTCGTCACACTCACAATAGGGTGGCCTATGTATTTAGCCTTCAATGTCTCTGGTAGACCCTATGATAGTTTTGCAAGCCACTACCACCCTTATGCTCCCATATATTCTAACCGTGAGAGGCTTCTGATCTATGTCTCTGATGTTGCTTTGTTTTCTGTGACTTACTCTCTCTACCGTGTTGCAACCCTGAAAGGGTTGGTTTGGCTGCTATGTGTTTATGGGGTGCCTTTGCTCATTGTGAACGGTTTTCTTGTGACTATCACATATTTGCAGCACACACACTTTGCCTTGCCTCATTACGATTCATCAGAATGGGACTGGCTGAAGGGAGCTTTGGCAACTATGGACAGAGATTATGGGATTCTGAACAAGGTGTTTCATCACATAACTGATACTCATGTGGCTCACCATCTCTTCTCTACAATGCCACATTACCATGCAATGGAGGCAACCAATGCAATCAAGCCAATATTGGGTGAGTACTACCAATTTGATGACACACCATTTTACAAGGCACTGTGGAGAGAAGCGAGAGAGTGCCTCTATGTGGAGCCAGATGAAGGAACATCCGAGAAGGGCGTGTATTGGTACAGGAACAAGTATTGATGGAGCAACCAATGGGCCATAGTGGGAGTTATGGAAGTTTTGTCATGTATTAGTACATAATTAGTAGAATGTTATAAATAAGTGGATTTGCCGCGTAATGACTTTGTGTGTATTGTGAAACAGCTTGTTGCGATCATGGTTATAATGTAAAAATAATTCTGGTATTAATTACATGTGGAAAGTGTTCTGCTTATAGCTTTCTGCCT
Coding sequences of Glyma.10g278000
>Glyma.10g278000.1 sequence-type=CDS polypeptide=Glyma.10g278000.1.p locus=Glyma.10g278000 ID=Glyma.10g278000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTCTAGCAAAGGAAACAACAATGGGAGGTAGAGGTCGTGTGGCCAAAGTGGAAGTTCAAGGGAAGAAGCCTCTCTCAAGGGTTCCAAACACAAAGCCACCATTCACTGTTGGCCAACTCAAGAAAGCAATTCCACCACACTGCTTTCAGCGCTCCCTCCTCACTTCATTCTCCTATGTTGTTTATGACCTTTCATTTGCCTTCATTTTCTACATTGCCACCACCTACTTCCACCTCCTTCCTCAACCCTTTTCCCTCATTGCATGGCCAATCTATTGGGTTCTCCAAGGTTGCCTTCTCACTGGTGTGTGGGTGATTGCTCACGAGTGTGGTCACCATGCCTTCAGCAAGTACCAATGGGTTGATGATGTTGTGGGTTTGACCCTTCACTCAACACTTTTAGTCCCTTATTTCTCATGGAAAATAAGCCATCGCCGCCATCACTCCAACACAGGTTCCCTTGACCGTGATGAAGTGTTTGTCCCAAAACCAAAATCCAAAGTTGCATGGTTTTCCAAGTACTTAAACAACCCTCTAGGAAGGGCTGTTTCTCTTCTCGTCACACTCACAATAGGGTGGCCTATGTATTTAGCCTTCAATGTCTCTGGTAGACCCTATGATAGTTTTGCAAGCCACTACCACCCTTATGCTCCCATATATTCTAACCGTGAGAGGCTTCTGATCTATGTCTCTGATGTTGCTTTGTTTTCTGTGACTTACTCTCTCTACCGTGTTGCAACCCTGAAAGGGTTGGTTTGGCTGCTATGTGTTTATGGGGTGCCTTTGCTCATTGTGAACGGTTTTCTTGTGACTATCACATATTTGCAGCACACACACTTTGCCTTGCCTCATTACGATTCATCAGAATGGGACTGGCTGAAGGGAGCTTTGGCAACTATGGACAGAGATTATGGGATTCTGAACAAGGTGTTTCATCACATAACTGATACTCATGTGGCTCACCATCTCTTCTCTACAATGCCACATTACCATGCAATGGAGGCAACCAATGCAATCAAGCCAATATTGGGTGAGTACTACCAATTTGATGACACACCATTTTACAAGGCACTGTGGAGAGAAGCGAGAGAGTGCCTCTATGTGGAGCCAGATGAAGGAACATCCGAGAAGGGCGTGTATTGGTACAGGAACAAGTATTGA

>Glyma.10g278000.2 sequence-type=CDS polypeptide=Glyma.10g278000.2.p locus=Glyma.10g278000 ID=Glyma.10g278000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTCTAGCAAAGGAAACAACAATGGGAGGTAGAGGTCGTGTGGCCAAAGTGGAAGTTCAAGGGAAGAAGCCTCTCTCAAGGGTTCCAAACACAAAGCCACCATTCACTGTTGGCCAACTCAAGAAAGCAATTCCACCACACTGCTTTCAGCGCTCCCTCCTCACTTCATTCTCCTATGTTGTTTATGACCTTTCATTTGCCTTCATTTTCTACATTGCCACCACCTACTTCCACCTCCTTCCTCAACCCTTTTCCCTCATTGCATGGCCAATCTATTGGGTTCTCCAAGGTTGCCTTCTCACTGGTGTGTGGGTGATTGCTCACGAGTGTGGTCACCATGCCTTCAGCAAGTACCAATGGGTTGATGATGTTGTGGGTTTGACCCTTCACTCAACACTTTTAGTCCCTTATTTCTCATGGAAAATAAGCCATCGCCGCCATCACTCCAACACAGGTTCCCTTGACCGTGATGAAGTGTTTGTCCCAAAACCAAAATCCAAAGTTGCATGGTTTTCCAAGTACTTAAACAACCCTCTAGGAAGGGCTGTTTCTCTTCTCGTCACACTCACAATAGGGTGGCCTATGTATTTAGCCTTCAATGTCTCTGGTAGACCCTATGATAGTTTTGCAAGCCACTACCACCCTTATGCTCCCATATATTCTAACCGTGAGAGGCTTCTGATCTATGTCTCTGATGTTGCTTTGTTTTCTGTGACTTACTCTCTCTACCGTGTTGCAACCCTGAAAGGGTTGGTTTGGCTGCTATGTGTTTATGGGGTGCCTTTGCTCATTGTGAACGGTTTTCTTGTGACTATCACATATTTGCAGCACACACACTTTGCCTTGCCTCATTACGATTCATCAGAATGGGACTGGCTGAAGGGAGCTTTGGCAACTATGGACAGAGATTATGGGATTCTGAACAAGGTGTTTCATCACATAACTGATACTCATGTGGCTCACCATCTCTTCTCTACAATGCCACATTACCATGCAATGGAGGCAACCAATGCAATCAAGCCAATATTGGGTGAGTACTACCAATTTGATGACACACCATTTTACAAGGCACTGTGGAGAGAAGCGAGAGAGTGCCTCTATGTGGAGCCAGATGAAGGAACATCCGAGAAGGGCGTGTATTGGTACAGGAACAAGTATTGA
Predicted protein sequences of Glyma.10g278000
>Glyma.10g278000.1.p sequence-type=predicted peptide transcript=Glyma.10g278000.1 locus=Glyma.10g278000 ID=Glyma.10g278000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLAKETTMGGRGRVAKVEVQGKKPLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFYIATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNKY*

>Glyma.10g278000.2.p sequence-type=predicted peptide transcript=Glyma.10g278000.2 locus=Glyma.10g278000 ID=Glyma.10g278000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLAKETTMGGRGRVAKVEVQGKKPLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFYIATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNKY*






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