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Report for Sequence Feature Glyma.10g261900

Feature Type:gene_model
Chromosome:Gm10
Start:48683541
stop:48685853
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g261900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26660.1AT SPX domain gene 2 JGI N/AIEA
GO:0016036GO-bp cellular response to phosphate starvation EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
KOG1161 KOG Protein involved in vacuolar polyphosphate accumulation, contains SPX domain JGI N/AIEA
PTHR10783Panther XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED JGI N/AIEA
PTHR10783:SF5Panther JGI N/AIEA
PF03105PFAM SPX domain JGI N/AIEA

Proteins Associated with Glyma.10g261900
LocusGene SymbolProtein Name
SPX5 SPX domain-containing protein 5

Expression Patterns of Glyma.10g261900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g261900
ParalogEvidenceComments
Glyma.20g129000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g261900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g40820 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g261900
>Glyma.10g261900.1 sequence-type=CDS polypeptide=Glyma.10g261900.1.p locus=Glyma.10g261900 ID=Glyma.10g261900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTTGAGAAGATCCTGAAGAGGCTGATTGAGCAGACGCTGCCTGATTGGCGCGACAAATTCTTGTGCTACAAAATCTTGAAGAAACAATTGAACGTTATGTGTCCCGAAGATGGCCAAGCTCCACCCCAATTGGATGCCAACGAACTCAACCACTTCCTTACTCTCTTGCAGCTCGAGATTGACAAGTTCAACAATTTCTTTATAGACAAGGAAGAAGAATATGTCATCAAATGGAGGGAGTTGCAAGACAGAGTTGTAGAAGCTGTGAATTCAAATGTAGACCTGATGTCATTGGGGACGGAAACAGTAGATTTTCATGGGGAGATGGTTTTGTTAGAGAACTACAGTGCTCTCAACTACACAGGTTTAGTGAAGATAATAAAAAAACACGATAAGAAAACTGGTGCTCTACTTCGCTCACCTTTTATCCAAGCTGTGGTGAAGCAGCCCTTCTATGAAATTGATGCGCTTAACAAGCTTGTAAAGGAGTGTGAGGTGATACTAAGCATTCTTTTCAACAATGGCCCGAGCTCATCAATAAGCCAGGATTTTATGCAAAATGGTTTTGGCTCCATGAGTGATAAAGAAAATAAAGAGACTGTAATGCAGGTTCCCGAAGAACTATCTGAAATAAAAAATATGAAGAACATGTATATCGAACTAACTCTAACAGCACTGCATACCTTGGAGCAAATCAGGGGTAGAAGCTCAACTCTAAGCATGTTCCCATCTTCTCCACACAACTAG
Predicted protein sequences of Glyma.10g261900
>Glyma.10g261900.1.p sequence-type=predicted peptide transcript=Glyma.10g261900.1 locus=Glyma.10g261900 ID=Glyma.10g261900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFEKILKRLIEQTLPDWRDKFLCYKILKKQLNVMCPEDGQAPPQLDANELNHFLTLLQLEIDKFNNFFIDKEEEYVIKWRELQDRVVEAVNSNVDLMSLGTETVDFHGEMVLLENYSALNYTGLVKIIKKHDKKTGALLRSPFIQAVVKQPFYEIDALNKLVKECEVILSILFNNGPSSSISQDFMQNGFGSMSDKENKETVMQVPEELSEIKNMKNMYIELTLTALHTLEQIRGRSSTLSMFPSSPHN*






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