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Report for Sequence Feature Glyma.10g258800

Feature Type:gene_model
Chromosome:Gm10
Start:48485321
stop:48488070
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g258800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G43740.1AT Leucine-rich repeat (LRR) family protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0007166GO-bp cell surface receptor signaling pathway EnsemblGenomesN/AIEA
GO:0007178GO-bp transmembrane receptor protein serine/threonine kinase signaling pathway EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0004675GO-mf transmembrane receptor protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF836Panther JGI N/AIEA
PF00560PFAM Leucine Rich Repeat JGI N/AIEA
PF08263PFAM Leucine rich repeat N-terminal domain JGI N/AIEA

Expression Patterns of Glyma.10g258800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g258800
ParalogEvidenceComments
Glyma.20g132400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g258800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g40490 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g258800
>Glyma.10g258800.2 sequence-type=transcript locus=Glyma.10g258800 ID=Glyma.10g258800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGGGGAACTTAATATTCAAAGCTCTTCTTATGGCTAGCTAGATCATATTATGtttttttttgtttcaattgtttggttttccttttttcattctttttttgtttcAAAATGACCTATTTTATTTCTTTGGCCTCTTCTTAGCTAGCAAGCAGACTTAAGCTTGGCCTTAATAGTTTTGATTTGATCCAAATAATTTGCGTAGGGAACGCTCTGCATGCTTTGAGAAGCAGGCTTTCTGATCCCAACAATATGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTTCATGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGATAACAGGAAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGTAAAATTCCAAAATCATTTGGAAAGTTGAAGTCACTTAAATTCTTGCGGCTAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCGTCTCACTGATCTCAAAATCTTTGATGTTTCTAATAATGATCTCTGTGGAACAATACCAGTTGAGGGAAACTTTGAATCTTTCCCAATGGAAAGTTTTAAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGAAGAAAGATAGAAATCGCATTATTATCATCTAAACAGATTGCAATGAAGAGGCTTAGTTTACGTAGGGAGAAAGGGAAAGGATGGTGTTATTTTCAGATCAATATTTCCTCACCATTTTTACACTTTTCTTAACTGAAAAAAGGGAGTATGAGTTGGAATCTACGTTTTTCTTATTTTATTATAAAAAAAGGAAGCTATGTAAGAATGCTCTGAAAATAATTGTATGTAAATAACATTATTGATGTATGCTTGACTCGAATATGAATCTAAAAATATCAAACTTGCATGTCGATTTATATAATAACATGATTGTACCACCTCTCTTT
Coding sequences of Glyma.10g258800
>Glyma.10g258800.1 sequence-type=CDS polypeptide=Glyma.10g258800.1.p locus=Glyma.10g258800 ID=Glyma.10g258800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCTTTCGTTTCCCTCTCTTTGTTGCTTCTCTTTCTCAACCACCCCCTCCTTTCCCTCTCAACCAACCCTGAAGGGAACGCTCTGCATGCTTTGAGAAGCAGGCTTTCTGATCCCAACAATATGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTTCATGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGATAACAGGAAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGTAAAATTCCAAAATCATTTGGAAAGTTGAAGTCACTTAAATTCTTGCGGCTAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCGTCTCACTGATCTCAAAATCTTTGATGTTTCTAATAATGATCTCTGTGGAACAATACCAGTTGAGGGAAACTTTGAATCTTTCCCAATGGAAAGTTTTAAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGA

>Glyma.10g258800.2 sequence-type=CDS polypeptide=Glyma.10g258800.2.p locus=Glyma.10g258800 ID=Glyma.10g258800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTTCATGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGATAACAGGAAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGTAAAATTCCAAAATCATTTGGAAAGTTGAAGTCACTTAAATTCTTGCGGCTAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCGTCTCACTGATCTCAAAATCTTTGATGTTTCTAATAATGATCTCTGTGGAACAATACCAGTTGAGGGAAACTTTGAATCTTTCCCAATGGAAAGTTTTAAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGA
Predicted protein sequences of Glyma.10g258800
>Glyma.10g258800.1.p sequence-type=predicted peptide transcript=Glyma.10g258800.1 locus=Glyma.10g258800 ID=Glyma.10g258800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPFVSLSLLLLFLNHPLLSLSTNPEGNALHALRSRLSDPNNMLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNEITGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTDLKIFDVSNNDLCGTIPVEGNFESFPMESFKNNRFSGPELKGLVPYDFGC*

>Glyma.10g258800.2.p sequence-type=predicted peptide transcript=Glyma.10g258800.2 locus=Glyma.10g258800 ID=Glyma.10g258800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNEITGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTDLKIFDVSNNDLCGTIPVEGNFESFPMESFKNNRFSGPELKGLVPYDFGC*






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