Glyma.10g248300

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Report for Sequence Feature Glyma.10g248300

Feature Type:	gene_model
Chromosome:	Gm10
Start:	47653718
stop:	47655824
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g248300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14910.2	AT	HISTIDINE BIOSYNTHESIS 5B	JGI	N/A	IEA
GO:0000105	GO-bp	histidine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0000105	GO-bp	histidine biosynthetic process	JGI	N/A	IEA
GO:0004424	GO-mf	imidazoleglycerol-phosphate dehydratase activity	EnsemblGenomes	N/A	IEA
GO:0004424	GO-mf	imidazoleglycerol-phosphate dehydratase activity	JGI	N/A	IEA
PTHR23133	Panther	IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7	JGI	N/A	IEA
PTHR23133:SF2	Panther	IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE	JGI	N/A	IEA
PF00475	PFAM	Imidazoleglycerol-phosphate dehydratase	JGI	N/A	IEA
HISTSYN-PWY	SoyCyc9	L-histidine biosynthesis	Plant Metabolic Network		ISS
GN7V-59941	SoyCyc9-rxn	imidazoleglycerol-phosphate dehydratase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.10g248300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g248300 not represented in the dataset	Glyma.10g248300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.10g248300

Paralog	Evidence	Comments
Glyma.20g145900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g248300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g39370	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.10g248300

Limit To All Plant Sequences

>Glyma.10g248300.1 sequence-type=CDS polypeptide=Glyma.10g248300.1.p locus=Glyma.10g248300 ID=Glyma.10g248300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAACTTGCTTCACACGGGCTGTTCGATGTACGCATAAAGGCTACAGGTGACATACATATTGATGATCATCACACGAATGAAGACGTTGCCCTTGCTATTGGAACCGCTTTGCTGCATGCTCTTGGCGATAGGAAGGGTATTAACCGGTTTGGTAACTTCTCTGCTCCACTGGATGAAGCATTAATCCATGTTTCACTGGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGTTAATGTTTTATATTCCAATTTTGAAAACTTTTAACAGAATATATATTGAAGCAACCTTCAAAGCTTTTGCTCGGGCTATTCGACAAGCAACAGGGTATGATCCACGTCACCTTTGA

Predicted protein sequences of Glyma.10g248300

Limit To All Plant Sequences

>Glyma.10g248300.1.p sequence-type=predicted peptide transcript=Glyma.10g248300.1 locus=Glyma.10g248300 ID=Glyma.10g248300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
QLASHGLFDVRIKATGDIHIDDHHTNEDVALAIGTALLHALGDRKGINRFGNFSAPLDEALIHVSLDLSGRPHLSYNLDIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIQQLMFYIPILKTFNRIYIEATFKAFARAIRQATGYDPRHL*

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