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Report for Sequence Feature Glyma.10g244100

Feature Type:gene_model
Chromosome:Gm10
Start:47242429
stop:47245840
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g244100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14710.1AT RmlC-like cupins superfamily protein JGI N/AIEA
GO:0006555GO-bp methionine metabolic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009086GO-bp methionine biosynthetic process EnsemblGenomesN/AIEA
GO:0019509GO-bp L-methionine salvage from methylthioadenosine EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0010309GO-mf acireductone dioxygenase [iron(II)-requiring] activity EnsemblGenomesN/AIEA
GO:0010309GO-mf acireductone dioxygenase [iron(II)-requiring] activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051213GO-mf dioxygenase activity EnsemblGenomesN/AIEA
KOG2107 KOG Uncharacterized conserved protein, contains double-stranded beta-helix domain JGI N/AIEA
PTHR23418Panther ACIREDUCTONE DIOXYGENASE JGI N/AIEA
PF03079PFAM ARD/ARD' family JGI N/AIEA
PWY-4361SoyCyc9 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Plant Metabolic Network ISS
PWY-5389SoyCyc9 3-methylthiopropanoate biosynthesis Plant Metabolic Network ISS
PWY-7270SoyCyc9 L-methionine salvage cycle II (plants) Plant Metabolic Network ISS
PWY-7528SoyCyc9 L-methionine salvage cycle I (bacteria and plants) Plant Metabolic Network ISS
GN7V-53498SoyCyc9-rxn acireductone dioxygenase [iron(II)-requiring] Plant Metabolic Network ISS

Expression Patterns of Glyma.10g244100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g244100 not represented in the dataset
Glyma.10g244100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g244100
ParalogEvidenceComments
Glyma.20g150200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g244100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g38940 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g244100
>Glyma.10g244100.2 sequence-type=transcript locus=Glyma.10g244100 ID=Glyma.10g244100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTATCTTCACATTATTAAAGTAAGAAACAAAAGCAAAATTGTCCAACGGCGAAAAAGGCTATTTTGGTAAAAAAAGAAAATATTGGGGTGCAATTGAGGGGTTTATAAATCGCGTAGGCACTAAGCACAGGGTTGCAAAAATCCGATCAGAAGACAGGTTCAAACCGGAGCAAAAAAACTTGTTACGATGGTTTCTTCCGACAAGGATCCACGAGAGGAAGTCCTTCAAGCATGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATGGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAGCAGAAAATCAAAAGCTTCTTTGAAGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCAAATGACCATCTCCCTGCAAGACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTGGCAACCATGCTGTTGATGCCGCCGCGTAAGATCTGGTTCCGCCTAATCGTAGTACGTGGGACTGAGACTTTGTGTTGCTAAAGTAAGGTTTGAACAAATGAAAATAATGGTGCCTTTAAATAAAGGGTCCCAGCTTTTTATGTTATGGTTTTTGTGTAGATGACCCTTTAAGCCTTTTACCCACGCCTGTGTTTCTGTGTAGGTGACCCTTTGAAAGATAGCCATAATATTATAACTACATATTCATCTAAGTTATAGTACATTTTAAGCTATGTCATATATTTAGTTGATTTGTAAAATTATGCTATCAAGTACTATCTTTATTCTTATTTATAAGATTCAATTAACTGATTTATCAAAATTAAAAAAAAAGTAGTTAATGTAGTTGAT

>Glyma.10g244100.3 sequence-type=transcript locus=Glyma.10g244100 ID=Glyma.10g244100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGTTGCAAAAATCCGATCAGAAGACAGGTTCAAACCGGAGCAAAAAAACTTGTTACGATGGTTTCTTCCGACAAGGATCCACGAGAGGAAGTCCTTCAAGCATGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATGGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAGCAGAAAATCAAAAGCTTCTTTGAAGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCAAATGACCATCTCCCTGCAAGACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTGGCAACCATGCTGTTGATGCCGCCGCGTAAGATCTGGTTCCGCCTAATCGTAGTACGTGGGACTGAGACTTTGTGTTGCTAAAGTGACCCTTTGAAAGATAGCCATAATATTATAACTACATATTCATCTAAGTTATAGTACATTTTAAGCTATGTCATATATTTAGTTGATTTGTAAAATTATGCTA
Coding sequences of Glyma.10g244100
>Glyma.10g244100.1 sequence-type=CDS polypeptide=Glyma.10g244100.1.p locus=Glyma.10g244100 ID=Glyma.10g244100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTTCTTCCGACAAGGATCCACGAGAGGAAGTCCTTCAAGCATGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATGGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAGCAGAAAATCAAAAGCTTCTTTGAAGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCAAATGACCATCTCCCTGCAAGGTACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTGGCAACCATGCTGTTGATGCCGCCGCGTAAGATCTGGTTCCGCCTAATCGTAGTACGTGGGACTGAGACTTTGTGTTGCTAA

>Glyma.10g244100.2 sequence-type=CDS polypeptide=Glyma.10g244100.2.p locus=Glyma.10g244100 ID=Glyma.10g244100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTTCTTCCGACAAGGATCCACGAGAGGAAGTCCTTCAAGCATGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATGGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAGCAGAAAATCAAAAGCTTCTTTGAAGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCAAATGACCATCTCCCTGCAAGACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTGGCAACCATGCTGTTGATGCCGCCGCGTAA

>Glyma.10g244100.3 sequence-type=CDS polypeptide=Glyma.10g244100.3.p locus=Glyma.10g244100 ID=Glyma.10g244100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTTCTTCCGACAAGGATCCACGAGAGGAAGTCCTTCAAGCATGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGAACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATGGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAGCAGAAAATCAAAAGCTTCTTTGAAGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCAAATGACCATCTCCCTGCAAGACAACAATATGTCAAGGATTTTGTGGAAAAGGATGTTGGCAACCATGCTGTTGATGCCGCCGCGTAA
Predicted protein sequences of Glyma.10g244100
>Glyma.10g244100.1.p sequence-type=predicted peptide transcript=Glyma.10g244100.1 locus=Glyma.10g244100 ID=Glyma.10g244100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSSDKDPREEVLQAWYMDDSDEDQRLPHHKEPKEFVSLDQLAELGVLSWKLDADNHENDPELKKIREERGYTYMDVCEVCPEKLPNYEQKIKSFFEEHLHTDEEIRFCAAGSGYFDVRDCNDAWIRVWVKKGGMIILPAGIYHRFTLDESNYIKALRFFVGEPVWTPHNRPNDHLPARYNNMSRILWKRMLATMLLMPPRKIWFRLIVVRGTETLCC*

>Glyma.10g244100.2.p sequence-type=predicted peptide transcript=Glyma.10g244100.2 locus=Glyma.10g244100 ID=Glyma.10g244100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSSDKDPREEVLQAWYMDDSDEDQRLPHHKEPKEFVSLDQLAELGVLSWKLDADNHENDPELKKIREERGYTYMDVCEVCPEKLPNYEQKIKSFFEEHLHTDEEIRFCAAGSGYFDVRDCNDAWIRVWVKKGGMIILPAGIYHRFTLDESNYIKALRFFVGEPVWTPHNRPNDHLPARQQYVKDFVEKDVGNHAVDAAA*

>Glyma.10g244100.3.p sequence-type=predicted peptide transcript=Glyma.10g244100.3 locus=Glyma.10g244100 ID=Glyma.10g244100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSSDKDPREEVLQAWYMDDSDEDQRLPHHKEPKEFVSLDQLAELGVLSWKLDADNHENDPELKKIREERGYTYMDVCEVCPEKLPNYEQKIKSFFEEHLHTDEEIRFCAAGSGYFDVRDCNDAWIRVWVKKGGMIILPAGIYHRFTLDESNYIKALRFFVGEPVWTPHNRPNDHLPARQQYVKDFVEKDVGNHAVDAAA*






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