Glyma.10g232400

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Report for Sequence Feature Glyma.10g232400

Feature Type:	gene_model
Chromosome:	Gm10
Start:	46187567
stop:	46191636
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g232400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G52440.1	AT	Bacterial sec-independent translocation protein mttA/Hcf106	JGI	N/A	IEA
GO:0009306	GO-bp	protein secretion	EnsemblGenomes	N/A	IEA
GO:0015031	GO-bp	protein transport	EnsemblGenomes	N/A	IEA
GO:0015031	GO-bp	protein transport	JGI	N/A	IEA
GO:0005886	GO-cc	plasma membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0008565	GO-mf	protein transporter activity	EnsemblGenomes	N/A	IEA
GO:0008565	GO-mf	protein transporter activity	JGI	N/A	IEA
PF02416	PFAM	mttA/Hcf106 family	JGI	N/A	IEA

Expression Patterns of Glyma.10g232400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g232400 not represented in the dataset	Glyma.10g232400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.10g232400

Paralog	Evidence	Comments
Glyma.20g161700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g232400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g37690	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.10g232400

Limit To All Plant Sequences

>Glyma.10g232400.2 sequence-type=transcript locus=Glyma.10g232400 ID=Glyma.10g232400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGACCATTAAATTGGAGATAGGATTTTTGTGCGGGCCAAGAAAGATACATTCATCGTTCAACAATCTTCAAACAAACAAAAAATAAAGTGTCTTAGAAATGACACGATCCTTGGCAATGGCTTCTTCATCAATGTTATGTCCGAAGCTGGGGAGTTGTGCAGTGTCACATACAAAGTTCCAAGCTTTTCATCTCTCTTCAATGTTCTCTCCACTGGGTCGAGGCCTTGTCTCACCTTGGAGTGGTTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATACCACACCAACTTCATCATCCACTTCCACTGTTGACCCTAATGGCACGCCAGATCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAACACCTTCCAAGGAAGGTGACAATGAGCCTCAAATCCAGCCTTCTGGTTAGTCTTTTTTGTGGAACATAGGCACTTTTTTTTTTTTCTCCCTCTTTCCACCCTCTTTGTTCTTCACCTTTCTTTGATATGTCAACAGCTGAGGAAACAGCTACTACTGTACCTCCACCTCAGAAGCCAGAAAGTGAGACGTAAACTCTGGGTTCATAAGCATAGGGAGTTAAAATAATTTGTCCAATTATCGCTTCAATGCCCGGAAGTGGGCAGTACTATTGGCACAAGAGATGAGAAGGGTCAGGCAATTTTGTTACCAGCTAGTCATTAGAATCATGTAAAATGTAAAGAACAAAACCATTAACGATTAGTATGTTTCCAAATTAATTGTAGTTATATTTGTCATTGATCATTGGATATCAGAACCGTAGTGTAAGCGTTAGCAATATTTTGTTTGAGTTATGCTTTGGTAATAAACCCGACTCCTTAATAGCG

Coding sequences of Glyma.10g232400

Limit To All Plant Sequences

>Glyma.10g232400.1 sequence-type=CDS polypeptide=Glyma.10g232400.1.p locus=Glyma.10g232400 ID=Glyma.10g232400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACACGATCCTTGGCAATGGCTTCTTCATCAATGTTATGTCCGAAGCTGGGGAGTTGTGCAGTGTCACATACAAAGTTCCAAGCTTTTCATCTCTCTTCAATGTTCTCTCCACTGGGTCGAGGCCTTGTCTCACCTTGGAGTGGTTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATACCACACCAACTTCATCATCCACTTCCACTGTTGACCCTAATGGCACGCCAGATCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAACACCTTCCAAGGAAGGTGACAATGAGCCTCAAATCCAGCCTTCTGCTGAGGAAACAGCTACTACTGTACCTCCACCTCAGAAGCCAGAAAGTGAGACGTAA

>Glyma.10g232400.2 sequence-type=CDS polypeptide=Glyma.10g232400.2.p locus=Glyma.10g232400 ID=Glyma.10g232400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACACGATCCTTGGCAATGGCTTCTTCATCAATGTTATGTCCGAAGCTGGGGAGTTGTGCAGTGTCACATACAAAGTTCCAAGCTTTTCATCTCTCTTCAATGTTCTCTCCACTGGGTCGAGGCCTTGTCTCACCTTGGAGTGGTTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATACCACACCAACTTCATCATCCACTTCCACTGTTGACCCTAATGGCACGCCAGATCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAACACCTTCCAAGGAAGGTGACAATGAGCCTCAAATCCAGCCTTCTGGTTAG

Predicted protein sequences of Glyma.10g232400

Limit To All Plant Sequences

>Glyma.10g232400.1.p sequence-type=predicted peptide transcript=Glyma.10g232400.1 locus=Glyma.10g232400 ID=Glyma.10g232400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTRSLAMASSSMLCPKLGSCAVSHTKFQAFHLSSMFSPLGRGLVSPWSGLKHLGISAKAKPLIHIDRKGGCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIKELQDVSREFKSTLEREIGLDDNLSPTQNTYNSNIRNTTPTSSSTSTVDPNGTPDPTKAYSSEEYLKITEEQLKASAAQQQGQTPSKEGDNEPQIQPSAEETATTVPPPQKPESET*

>Glyma.10g232400.2.p sequence-type=predicted peptide transcript=Glyma.10g232400.2 locus=Glyma.10g232400 ID=Glyma.10g232400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTRSLAMASSSMLCPKLGSCAVSHTKFQAFHLSSMFSPLGRGLVSPWSGLKHLGISAKAKPLIHIDRKGGCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIKELQDVSREFKSTLEREIGLDDNLSPTQNTYNSNIRNTTPTSSSTSTVDPNGTPDPTKAYSSEEYLKITEEQLKASAAQQQGQTPSKEGDNEPQIQPSG*

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