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Report for Sequence Feature Glyma.10g231200

Feature Type:gene_model
Chromosome:Gm10
Start:46093079
stop:46095496
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g231200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25700.1AT beta-hydroxylase 1 JGI N/AIEA
GO:0006633GO-bp fatty acid biosynthetic process JGI N/AIEA
GO:0008610GO-bp lipid biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
PF04116PFAM Fatty acid hydroxylase superfamily JGI N/AIEA

Proteins Associated with Glyma.10g231200
LocusGene SymbolProtein Name
BCH3 beta-carotene hydroxylase BCH3

Expression Patterns of Glyma.10g231200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g231200
ParalogEvidenceComments
Glyma.20g162600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g231200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g37560 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g231200
>Glyma.10g231200.2 sequence-type=transcript locus=Glyma.10g231200 ID=Glyma.10g231200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCATTGTTGCACAGTACACAAAATTTTGGTCTATAATTATATGCAACCTCCCTCTCTTCACAATCATCACATCCCTTACTCGCAGGCGAACACAAACACTCTCTCTTTGCCTCTTGGCGCAATTCGATCGAAGCTATCTACCCTTCCATGGCGGCAGGACTCTCCACCGCCGCAATCTTAAAGCCCTACAATCTCGTCCAACCCCCAATCCCTCTTTCTAAACCAACCACATCACTCTTCTTCAACCCCTTAAGATGTTTCCATCACAGTACAATCCTTCGAGTTCGACCCAGAAGAAGAATGAGCGGCTTCACCGTTTGCGTCCTCACGGAGGATTCCAAAGAGATCAAAACGGTCGAACAAGAACAAGAACAAGTGATTCCTCAAGCCGTGTCAGCAGGTGTGGCAGAGAAGTTGGCGAGAAAGAAGTCCCAGAGGTTCACTTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAGGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTCAACGACGTTTTCGCGATAATTAACGCTGTCCCTGCGATCGCTCTTCTCTCATACGGTATTTTCCACAAGGGTCTGGTCCCTGGGCTCTGTTTTGGTGCAGGCCTTGGAATCACGGTATTTGGGATGGCCTACATGTTTGTCCACGATGGATTAGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAAGTAATTATAAACTTCACATTTATTTAGTAAAACAAATTAGAAAAGGAACGTGTTTTGGGTGTTTGTTTCTGTTTCTTGTGGAATAGGATCTGAATTATGATCTTATGACCTTGAATTTTTGTTGTCTGTATTCAGCTCCACCATTCGGATAAATTCAACGGGGCGCCATATGGCCTCTTTTTGGGACCAAAGGAAGTTGAAGAAGTGGGAGGGCTAGAAGAGCTAGAGAAAGAGATAAGTAGGAGAATCAGGTCCGGTTCATGACCATGCCAAGCTAGAGTTGTTTGAAAGAATTGACTGTAGAAGAAAGGGAAACAATACAATTAATGAATGAAATGATTTGCATCTTTTTTTGCTTTCATACAGCTATATATTCATATTATAGCAGAATATAATATAAAAGAAAAATAGGTTAAAAGTTTATAGATATATGAACAGAACATGTCCGTGCCTTCGGTTATTTATTTATTCTGTTTTATTTCATAATTGAAGAGAAAATGAACATGATCTG
Coding sequences of Glyma.10g231200
>Glyma.10g231200.1 sequence-type=CDS polypeptide=Glyma.10g231200.1.p locus=Glyma.10g231200 ID=Glyma.10g231200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCAGGACTCTCCACCGCCGCAATCTTAAAGCCCTACAATCTCGTCCAACCCCCAATCCCTCTTTCTAAACCAACCACATCACTCTTCTTCAACCCCTTAAGATGTTTCCATCACAGTACAATCCTTCGAGTTCGACCCAGAAGAAGAATGAGCGGCTTCACCGTTTGCGTCCTCACGGAGGATTCCAAAGAGATCAAAACGGTCGAACAAGAACAAGAACAAGTGATTCCTCAAGCCGTGTCAGCAGGTGTGGCAGAGAAGTTGGCGAGAAAGAAGTCCCAGAGGTTCACTTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAGGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTCAACGACGTTTTCGCGATAATTAACGCTGTCCCTGCGATCGCTCTTCTCTCATACGGTATTTTCCACAAGGGTCTGGTCCCTGGGCTCTGTTTTGGTGCAGGCCTTGGAATCACGGTATTTGGGATGGCCTACATGTTTGTCCACGATGGATTAGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAACTCCACCATTCGGATAAATTCAACGGGGCGCCATATGGCCTCTTTTTGGGACCAAAGGAAGTTGAAGAAGTGGGAGGGCTAGAAGAGCTAGAGAAAGAGATAAGTAGGAGAATCAGGTCCGGTTCATGA

>Glyma.10g231200.2 sequence-type=CDS polypeptide=Glyma.10g231200.2.p locus=Glyma.10g231200 ID=Glyma.10g231200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCAGGACTCTCCACCGCCGCAATCTTAAAGCCCTACAATCTCGTCCAACCCCCAATCCCTCTTTCTAAACCAACCACATCACTCTTCTTCAACCCCTTAAGATGTTTCCATCACAGTACAATCCTTCGAGTTCGACCCAGAAGAAGAATGAGCGGCTTCACCGTTTGCGTCCTCACGGAGGATTCCAAAGAGATCAAAACGGTCGAACAAGAACAAGAACAAGTGATTCCTCAAGCCGTGTCAGCAGGTGTGGCAGAGAAGTTGGCGAGAAAGAAGTCCCAGAGGTTCACTTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTTGCCGTTTATTATAGATTCTCCTGGCAAATGGAGGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTCAACGACGTTTTCGCGATAATTAACGCTGTCCCTGCGATCGCTCTTCTCTCATACGGTATTTTCCACAAGGGTCTGGTCCCTGGGCTCTGTTTTGGTGCAGGCCTTGGAATCACGGTATTTGGGATGGCCTACATGTTTGTCCACGATGGATTAGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAAGTAATTATAAACTTCACATTTATTTAG
Predicted protein sequences of Glyma.10g231200
>Glyma.10g231200.1.p sequence-type=predicted peptide transcript=Glyma.10g231200.1 locus=Glyma.10g231200 ID=Glyma.10g231200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAGLSTAAILKPYNLVQPPIPLSKPTTSLFFNPLRCFHHSTILRVRPRRRMSGFTVCVLTEDSKEIKTVEQEQEQVIPQAVSAGVAEKLARKKSQRFTYLVAAVMSSFGITSMAVFAVYYRFSWQMEGGDVPWSEMLGTFSLSVGAAVAMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGIFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHSDKFNGAPYGLFLGPKEVEEVGGLEELEKEISRRIRSGS*

>Glyma.10g231200.2.p sequence-type=predicted peptide transcript=Glyma.10g231200.2 locus=Glyma.10g231200 ID=Glyma.10g231200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAGLSTAAILKPYNLVQPPIPLSKPTTSLFFNPLRCFHHSTILRVRPRRRMSGFTVCVLTEDSKEIKTVEQEQEQVIPQAVSAGVAEKLARKKSQRFTYLVAAVMSSFGITSMAVFAVYYRFSWQMEGGDVPWSEMLGTFSLSVGAAVAMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGIFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQVIINFTFI*






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