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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10370.1 | AT | FAD-dependent oxidoreductase family protein | JGI | N/A | IEA |
| GO:0006072 | GO-bp | glycerol-3-phosphate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0009331 | GO-cc | glycerol-3-phosphate dehydrogenase complex | EnsemblGenomes | N/A | IEA |
| GO:0004368 | GO-mf | glycerol-3-phosphate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0052590 | GO-mf | sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0052591 | GO-mf | sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| KOG0042 | KOG | Glycerol-3-phosphate dehydrogenase | JGI | N/A | IEA |
| PTHR11985 | Panther | GLYCEROL-3-PHOSPHATE DEHYDROGENASE | JGI | N/A | IEA |
| PF01266 | PFAM | FAD dependent oxidoreductase | JGI | N/A | IEA |
| PWY-4261 | SoyCyc9 | glycerol degradation I | Plant Metabolic Network | ISS | |
| PWY-6118 | SoyCyc9 | glycerol-3-phosphate shuttle | Plant Metabolic Network | ISS | |
| PWY-6952 | SoyCyc9 | glycerophosphodiester degradation | Plant Metabolic Network | ISS | |
| GN7V-53382 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.10g207700 not represented in the dataset |
Glyma.10g207700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.20g183100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g35170 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g207700.1 sequence-type=CDS polypeptide=Glyma.10g207700.1.p locus=Glyma.10g207700 ID=Glyma.10g207700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACGCGCCTCAGAAAACTCGGCACCGTCGCCACGGCCATTGCCACCGCGTACGGTGGCGCCCTCATCCTGCACGAGCCTCTCGTCTCCGCCAGCGATCACGGAGGCGGTTCCCGCCTCGAGGCACTCCGGAAGAAGGTGCACGACTCCGACGCCGTCGTGCCGGCCAGGAAGGCGCAGCTTTCAGCGCTCGAGGCCGCCGGAAAGTCGAATCCGCTCGACGTTCTCGTCATCGGCGGCGGCGCCACCGGTTCCGGCGCCACACTCGACGCCGTGACTCGAGGACTCCGCGTCGGGCTCGTGGAGAGGGAGGATTTCGCCGCCGGAACTTCGTCGCGATCCACGAAGCTCCTTCATGGAGGTGTTCGATACCTGGAGAAAGCTGTATTTAACCTTGACTATGGACAATTCAAGTTAGTGCTTCATGCCCTTGAAGAGCGGAAACAGGTTATTGAAAATGCACCACACCTATGTCATGCATTGCCATGCATGACTCCATGTTTTAGCTGGTTTGAAGTAGTGTACTACTGGATGGGCTTGAAAATGTATGATTTGGTCGCTGGAAGACAACTGTTGCACTTATCAAGATATTATTCGACAAAAGAGTCTGTTGAGCTCTTTCCCACTCTGGCAAGGGAGGTAAATGATAGAACCCTAAGGGGCACAGTTGTTTATTATGATGGGCAGATGAATGATGCACGACTTAATGTTGGATTGGCTTGTACTGCTGCTCTAGCTGGTGCAGCAGTGCTGAACCATGCAGAAGTTTTATCATTACTGAAGAATGATGATGGAAAACGGGTTATTGGTGCACGAATTCGGGACAATTTAACTGGCAAAGAGTTTGATACATATGCAAAAGTAATTGTGAATGCGGGTGGGCCATTTTGTGACTCTATAAGGAAAATGGCCAACAAAAATGCACAGGAAATGATTTCTCCCAGCAGTGGGGTGCATATTATACTCCCTGATTATTATTCTCCAGAAGGAATGGGTCTAATTGTCCCTAAAACTAAGGATGGACGTGTTGTTTTTATGCTGCCATGGCTGGGAAGAACAGTTGCTGGGACTACAGATTCTAGTACTAGCATTACTTATCTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCCGATTACCTTAATGTTAAAGTACGCCGTGCGGATGTTCTTTCTGCTTGGAGTGGCATTCGGCCATTAGCAGTGGACCCAACAGCCAAAAATACTGAGAGTATCTCAAGGGATCATGTTGTTTGTGAGGATTACCCTGGTTTGGTCACCATCACTGGTGGCAAGTGGACTACCTATCGAAGCATGGCAGAAGATGCTGTTAATGCAGCTATAAAGTCTGGAAAGCTGACCCCCACCAGTAGATGTGTGACCAACAATCTCCGGCTTGTTGGTGGTGAAGGGTGGGAGCTTTCTTCTTTTACAGTTCTTGCTCAACAGTATAAGCGCATGAAAAGTACATATAGTGGTAAAGTTGTTCCCGGGGTAATGGATTCTGCTACTGCAAAGCACTTGTCTCAGGCATATGGAACATTGGCTGAGCGTGTGGCTACCATTGCTCAGAATGAAAATTTGGGTAAACGACTTGCCCACGGTTACCCTTATCTGGAGGCAGAAGTGGCCTACTGTGCTCGTAATGAATATTGTGAATCTGCTATCGATTTCATTGCAAGGAGGACTCGTCTTGCTTTCCTTGAAACTAACGCAGCACGAAAGGCATTGCCTCGCGTGATTGAAATATTGGCAAATGAGCACAAGTGGGACAATCCAAAGCAGAAGGAAGAGTTGGAGAAGGCTACAGAGTTTTTGAAGACTTTTAAATCCTCCAAAAATGCTCAGTTCCACGATGGAAAACACAGTTAG
>Glyma.10g207700.1.p sequence-type=predicted peptide transcript=Glyma.10g207700.1 locus=Glyma.10g207700 ID=Glyma.10g207700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTRLRKLGTVATAIATAYGGALILHEPLVSASDHGGGSRLEALRKKVHDSDAVVPARKAQLSALEAAGKSNPLDVLVIGGGATGSGATLDAVTRGLRVGLVEREDFAAGTSSRSTKLLHGGVRYLEKAVFNLDYGQFKLVLHALEERKQVIENAPHLCHALPCMTPCFSWFEVVYYWMGLKMYDLVAGRQLLHLSRYYSTKESVELFPTLAREVNDRTLRGTVVYYDGQMNDARLNVGLACTAALAGAAVLNHAEVLSLLKNDDGKRVIGARIRDNLTGKEFDTYAKVIVNAGGPFCDSIRKMANKNAQEMISPSSGVHIILPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSSTSITYLPEPHEDEIQFILDAISDYLNVKVRRADVLSAWSGIRPLAVDPTAKNTESISRDHVVCEDYPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLTPTSRCVTNNLRLVGGEGWELSSFTVLAQQYKRMKSTYSGKVVPGVMDSATAKHLSQAYGTLAERVATIAQNENLGKRLAHGYPYLEAEVAYCARNEYCESAIDFIARRTRLAFLETNAARKALPRVIEILANEHKWDNPKQKEELEKATEFLKTFKSSKNAQFHDGKHS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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