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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54010.1 | AT | UDP-Glycosyltransferase superfamily protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0043231 | GO-cc | intracellular membrane-bounded organelle | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016758 | GO-mf | transferase activity, transferring hexosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016758 | GO-mf | transferase activity, transferring hexosyl groups | JGI | N/A | IEA |
| GO:0047230 | GO-mf | flavonol-3-O-glucoside L-rhamnosyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0080043 | GO-mf | quercetin 3-O-glucosyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0080044 | GO-mf | quercetin 7-O-glucosyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG1192 | KOG | UDP-glucuronosyl and UDP-glucosyl transferase | JGI | N/A | IEA |
| PTHR11926 | Panther | GLUCOSYL/GLUCURONOSYL TRANSFERASES | JGI | N/A | IEA |
| PTHR11926:SF77 | Panther | SUBFAMILY NOT NAMED | JGI | N/A | IEA |
| PF00201 | PFAM | UDP-glucoronosyl and UDP-glucosyl transferase | JGI | N/A | IEA |
| PWY-5125 | SoyCyc9 | anthocyanin biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7267 | SoyCyc9 | anthocyanin biosynthesis (pelargonidin 3-O-glucoside) | Plant Metabolic Network | ISS | |
| PWY-7450 | SoyCyc9 | anthocyanidin modification (Arabidopsis) | Plant Metabolic Network | ISS | |
| GN7V-45604 | SoyCyc9-rxn | anthocyanidin 3-O-glucosyltransferase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| FG2 | flavonol 3-O-glucoside (1->6) rhamnosyltransferase | |
| F3G6''Rt | flavonol 3-O-glucoside (1->6) rhamnosyltransferase | |
| UGT79A6-1 | flavonol 3-O-glucoside (1->6) rhamnosyltransferase gene 1 | |
| UGT79A6 | flavonol 3-O-glucoside (1->6) rhamnosyltransferase |
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Glyma.10g194000 not represented in the dataset |
Glyma.10g194000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.20g196000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g33790 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g194000.1 sequence-type=CDS polypeptide=Glyma.10g194000.1.p locus=Glyma.10g194000 ID=Glyma.10g194000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTAGTGAATTAGCTATGAACAATGATGAGCTACATGTGGTTATGTTCCCATTCCTTGCATTTGGCCACATTAGTCCATTTGTTCAGCTCTCCAACAAGTTGTTCTCTCATGGTGTTCATGTCACTTTCTTGTCAGCTGCATCCAACATTCCCAGAATCAGATCAACTCTTAATCTCAATCCAGCCATCAATGTTATCTCACTAAAGTTCCCAAATGGTATAACCAACACTGCTGAATTGCCACCTCACTTAGCTGGAAATCTCATACACGCCCTTGACCTCACTCAAGATCAGGTGAAGTCCCTTTTGTTGGAACTCAAACCCCACTATGTTTTCTTTGACTTTGCACAACATTGGCTCCCAAAATTAGCTTCTGAAGTTGGCATCAAGTCTGTTCATTTCTCAGTCTACTCTGCCATTTCTGATGCTTACATTACCGTGCCTTCTAGATTTGCTGATGTTGAAGGAAGAAACATCACTTTTGAGGATCTTAAAAAGCCTCCACCTGGGTATCCTCAAAACTCTAATATTTCCCTCAAGGCCTTTGAGGCCATGGACTTTATGTTCCTCTTCACAAGATTTGGTGAAAAAAACCTTACTGGTTATGAGCGAGTTTTGCAAAGCCTTGGTGAGTGTTCATTCATAGTGTTCAAAACGTGCAAGGAAATAGAAGGACCCTACTTAGACTACATAGAAACGCAATTTCGAAAACCAGTTTTGCTATCTGGTCCACTAGTCCCCGAGCCATCAACCGATGTGCTTGAGGAAAAGTGGTCCAAATGGTTAGATGGTTTCCCTGCCAAATCTGTCATATTATGCTCCTTTGGCAGTGAGACATTTCTGAGTGATTATCAAATCAAAGAACTAGCCAGTGGGTTAGAACTCACTGGCTTACCTTTCATTTTGGTTCTGAATTTCCCATCCAATCTCTCTGCCAAAGCTGAGTTGGAGAGAGCATTGCCAAAAGGGTATTTGGAAAGAGTGAAGAATAGGGGAGTGGTGCACAGTGGTTGGTTTCAGCAGCAGCTTGTGCTGAAACACTCAAGTGTGGGGTGCTATGTATGCCATGGTGGCTTTAGTTCAGTGATTGAAGCTATGGTCAATGAGTGTCAACTGGTGCTGTTGCCTTTCAAGGGTGACCAGTTTTTCAATTCTAAACTCATTGCCAATGATTTAAAGGCAGGGGTAGAGGTGAATAGGAGTGATGAAGATGGGTTCTTTCACAAAGAGGATATACTGGAGGCATTGAAAACTGTCATGTTGGAGGATAACAAAGAGCAAGGGAAGCAAATAAGAGAAAACCACATGCAATGGAGCAAGTTTTTATCAAATAAGGAAATTCAGAACAAATTCATCACAGATCTGGTTGCCCAGTTAAAGTCTATGGCTTAG
>Glyma.10g194000.1.p sequence-type=predicted peptide transcript=Glyma.10g194000.1 locus=Glyma.10g194000 ID=Glyma.10g194000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPSELAMNNDELHVVMFPFLAFGHISPFVQLSNKLFSHGVHVTFLSAASNIPRIRSTLNLNPAINVISLKFPNGITNTAELPPHLAGNLIHALDLTQDQVKSLLLELKPHYVFFDFAQHWLPKLASEVGIKSVHFSVYSAISDAYITVPSRFADVEGRNITFEDLKKPPPGYPQNSNISLKAFEAMDFMFLFTRFGEKNLTGYERVLQSLGECSFIVFKTCKEIEGPYLDYIETQFRKPVLLSGPLVPEPSTDVLEEKWSKWLDGFPAKSVILCSFGSETFLSDYQIKELASGLELTGLPFILVLNFPSNLSAKAELERALPKGYLERVKNRGVVHSGWFQQQLVLKHSSVGCYVCHGGFSSVIEAMVNECQLVLLPFKGDQFFNSKLIANDLKAGVEVNRSDEDGFFHKEDILEALKTVMLEDNKEQGKQIRENHMQWSKFLSNKEIQNKFITDLVAQLKSMA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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