Glyma.10g193500

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Report for Sequence Feature Glyma.10g193500

Feature Type:	gene_model
Chromosome:	Gm10
Start:	42564218
stop:	42568587
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g193500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51100.1	AT	Fe superoxide dismutase 2	JGI	N/A	IEA
GO:0006801	GO-bp	superoxide metabolic process	EnsemblGenomes	N/A	IEA
GO:0006801	GO-bp	superoxide metabolic process	JGI	N/A	IEA
GO:0019430	GO-bp	removal of superoxide radicals	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0004784	GO-mf	superoxide dismutase activity	EnsemblGenomes	N/A	IEA
GO:0004784	GO-mf	superoxide dismutase activity	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
KOG0876	KOG	Manganese superoxide dismutase	JGI	N/A	IEA
PTHR11404	Panther	SUPEROXIDE DISMUTASE 2	JGI	N/A	IEA
PTHR11404:SF8	Panther	37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL	JGI	N/A	IEA
PF00081	PFAM	Iron/manganese superoxide dismutases, alpha-hairpin domain	JGI	N/A	IEA
PF02777	PFAM	Iron/manganese superoxide dismutases, C-terminal domain	JGI	N/A	IEA
DETOX1-PWY	SoyCyc9	superoxide radicals degradation	Plant Metabolic Network		ISS
DETOX1-PWY-1	SoyCyc9	reactive oxygen species degradation	Plant Metabolic Network		ISS
GN7V-53680	SoyCyc9-rxn	superoxide dismutase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.10g193500

Locus	Gene Symbol	Protein Name
	SODB2	iron-superoxide dismutase

Expression Patterns of Glyma.10g193500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g193500 not represented in the dataset	Glyma.10g193500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.10g193500

Paralog	Evidence	Comments
Glyma.20g196900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g193500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g33710	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.10g193500

Limit To All Plant Sequences

>Glyma.10g193500.2 sequence-type=transcript locus=Glyma.10g193500 ID=Glyma.10g193500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAAGGAATGGGTAGACCTTTGTCCAAAATCCTCACTCCAGCCACACGCCTCAGTAGACCATGGCCTCATTGGGTGGGTTACAAAATCTAAGCGGCATCAATTTTCTTATCAAAAAAGAGGGTCCAAAAGTCAATGCGAAGTTCGAGCTGAAGCCGCCACCATATCCACTGAATGGTTTGGAGCCGGTGATGAGCCAGCAGACACTTGAGTTTCATTGGGGGAAACACCACAAGACATATGTGGAAAATCTGAAAAAACAAATTGTTGGGACAGAGCTTGATGGGAAATCACTAGAAGAGATTATAGTGACATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCATTTGAAAAATTCCTTGATGAGTTTAAGGCTGCTGCTGCAACACAATTTGGTTCAGGATGGGCTTGGCTTGCATATAGAGCAAGCAAATTTGATGGGGAAAATGCAGCAAATCCTCCTTCACCAGATGAGGACAACAAGCTAGTGGTGCTCAAGAGTCCCAATGCTGTGAACCCCCTTGTTTGGGGAGGCTATTATGTAAGTAGTAATAATATTATTGTTCCTTACTTATCTTGAAATATGAATGATAGTTGGGTCTAATGAGTTCATTTCCCTGGTAAATTCTGATGTGATTTTATCTTAATTTCTTGCAGCCACTTCTTACCATTGATGTTTGGGAGGTATTAATCATATTTGCCTTTTGTTTGTTATTTGATGAAACAATTTGCACATACAAGCTTTATAACAGTCATTAATAACAACTTGCTGACTTTGTAATACTTGTTTTCATTTTTGTACAGCATGCTTACTACCTTGATTTTCAGAACCGGCGCCCTGATTATATATCAGTGTTCATGGATAAGCTTGTTTCCTGGGATGCAGTGAGTTCTAGACTTGAACAAGCAAGGCTTTAATTAACCAGTGCATGATGCTGAATTAAATGCAGAATAAGTGATTTATCCTGATAGTGATGATGAATTGGATGGCGTCATGAGGAATAGTGGATTATTTTTATCTAGAAAGTGTACGATGGCACATCTTTTGTACTTTAAATAGGTGTTGTGGTATCAGGCTAAATCACTTCAGCCTGCAGATTATGTTCTATAATTAGAAATCTTAGTTATGGTTCTCTTTGTGTGACTGTGTGAACAATAAAATTGCTTATGCATGAACATTCAGCAAAATAATACTATGTTGTAGAACCTTTTCACGTAACTTGTACGAGAGCGTATCTTTTTTTCCATGAGCATCACTTAGGATTCAAGTTGAAACTACATTATAAGTGAAGGGAT

Coding sequences of Glyma.10g193500

Limit To All Plant Sequences

>Glyma.10g193500.1 sequence-type=CDS polypeptide=Glyma.10g193500.1.p locus=Glyma.10g193500 ID=Glyma.10g193500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCATTGGGTGGGTTACAAAATCTAAGCGGCATCAATTTTCTTATCAAAAAAGAGGGTCCAAAAGTCAATGCGAAGTTCGAGCTGAAGCCGCCACCATATCCACTGAATGGTTTGGAGCCGGTGATGAGCCAGCAGACACTTGAGTTTCATTGGGGGAAACACCACAAGACATATGTGGAAAATCTGAAAAAACAAATTGTTGGGACAGAGCTTGATGGGAAATCACTAGAAGAGATTATAGTGACATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCATTTGAAAAATTCCTTGATGAGTTTAAGGCTGCTGCTGCAACACAATTTGGTTCAGGATGGGCTTGGCTTGCATATAGAGCAAGCAAATTTGATGGGGAAAATGCAGCAAATCCTCCTTCACCAGATGAGGACAACAAGCTAGTGGTGCTCAAGAGTCCCAATGCTGTGAACCCCCTTGTTTGGGGAGGCTATTATCCACTTCTTACCATTGATGTTTGGGAGCATGCTTACTACCTTGATTTTCAGAACCGGCGCCCTGATTATATATCAGTGTTCATGGATAAGCTTGTTTCCTGGGATGCAGTGAGTTCTAGACTTGAACAAGCAAGGCTTTAA

>Glyma.10g193500.2 sequence-type=CDS polypeptide=Glyma.10g193500.2.p locus=Glyma.10g193500 ID=Glyma.10g193500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCATTGGGTGGGTTACAAAATCTAAGCGGCATCAATTTTCTTATCAAAAAAGAGGGTCCAAAAGTCAATGCGAAGTTCGAGCTGAAGCCGCCACCATATCCACTGAATGGTTTGGAGCCGGTGATGAGCCAGCAGACACTTGAGTTTCATTGGGGGAAACACCACAAGACATATGTGGAAAATCTGAAAAAACAAATTGTTGGGACAGAGCTTGATGGGAAATCACTAGAAGAGATTATAGTGACATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCATTTGAAAAATTCCTTGATGAGTTTAAGGCTGCTGCTGCAACACAATTTGGTTCAGGATGGGCTTGGCTTGCATATAGAGCAAGCAAATTTGATGGGGAAAATGCAGCAAATCCTCCTTCACCAGATGAGGACAACAAGCTAGTGGTGCTCAAGAGTCCCAATGCTGTGAACCCCCTTGTTTGGGGAGGCTATTATGTAAGTAGTAATAATATTATTGTTCCTTACTTATCTTGA

Predicted protein sequences of Glyma.10g193500

Limit To All Plant Sequences

>Glyma.10g193500.1.p sequence-type=predicted peptide transcript=Glyma.10g193500.1 locus=Glyma.10g193500 ID=Glyma.10g193500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLGGLQNLSGINFLIKKEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQIVGTELDGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYRASKFDGENAANPPSPDEDNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQARL*

>Glyma.10g193500.2.p sequence-type=predicted peptide transcript=Glyma.10g193500.2 locus=Glyma.10g193500 ID=Glyma.10g193500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLGGLQNLSGINFLIKKEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQIVGTELDGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYRASKFDGENAANPPSPDEDNKLVVLKSPNAVNPLVWGGYYVSSNNIIVPYLS*

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