SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g145500

Feature Type:gene_model
Chromosome:Gm10
Start:38030034
stop:38032789
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g145500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56590.1AT Clathrin adaptor complexes medium subunit family protein JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0030131GO-cc clathrin adaptor complex EnsemblGenomesN/AIEA
GO:0030131GO-cc clathrin adaptor complex JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG2740 KOG Clathrin-associated protein medium chain JGI N/AIEA
PTHR11998Panther CLATHRIN COAT ASSEMBLY PROTEIN JGI N/AIEA
PTHR11998:SF4Panther CARMINE JGI N/AIEA
PF00928PFAM Adaptor complexes medium subunit family JGI N/AIEA

Expression Patterns of Glyma.10g145500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g145500 not represented in the dataset
Glyma.10g145500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g145500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g28631 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g145500
>Glyma.10g145500.2 sequence-type=transcript locus=Glyma.10g145500 ID=Glyma.10g145500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTTGTATTGTTCTTTTCATTTCTTAGTGGAATTATTGAATTTGATTGCAATTTGAGTTTTTGATTTCATATGAAGAGAGGTAATGTTAGAGAAACAGCTCACGGGGCACCGCGTGGATCGCTCCATCTGTGCCTGGTTCTGGGAACAAGCCATTTCACTAGGCGACTCCTTCAAGCAACAACCGGTGATTGCTTCTCCTACGCATTATATTTTCCAAGTTTTTCGTGATGGAATCACTTTTTTGGGCTGCACGCAAGTTGAAATGCCACCCTTGATGGCCATTGAGTTCCTTTGTAGGGTAGCCAATGTCCTCAATGATTATTTTGGGGCCTTAAACGAGGACATAATTAAAGACAACTTTGTCATTGTGTACGAGCTGTTGGATGAGATGATAGACAATGGCTTCCCCTTAACTACAGAACCTAGTATCCTGCGAGAAATGATTACTCCGCCGAATATGGTTGACAAAGCCTTGAGCATCGTCACTGGTAGCAGTTCAAATGTGAGTGATACCCTTCCTGGGGCTGCAGCATCTTGTGTTCCCTGGAGAACGGCAGAGCCAAAGTACTCCAACAATGAAGTCTATGTAGACCTTGTTGAAGAAATGGATGCAATTATAAACAGGGACGGGGGTTTGGTGAAATGTGAGATCTATGGTGAAGTCCAAGTAAATTCCCGGATCTCAGGTTTTCCTGATTTAACCCTTTCATTTACAAATCCTTCCATCCTCAATGATGTGAGGTTCCATCCCTGTGTTCGTTTTCGGCCTTGGGAGTCTCATCAAATTCTTTCCTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAGTTAGAAAGTTGAAGAGCACCCCAATATATGTAAAGCCGCAGTTAACTTCAGATGGTGGGATATGCCGTGTTAGTGTATTGGCTGGAATAAGAAATGATCCTGGAAAGACAATTGATTCGGTTACTGTTCAGTTTCAGCTCCCTCCTTTCATCTTATCAGCTGATCTTACTTCAAATCATGGAACAGTGAACATCCTTGCTAAACAGACTTGCATATGGTCCATTGGTCGAATCCCAAAAGACAAAACCCCTTCCTTGTCTGGAACATTAGTGATTGAAACTGGATTGGAGCGCCTTCATGTCTTCCCTACATTTCAAGTGGGTTTTAGGATTATGGGTGTCGCCCTGTCTGGTCTGCAAATAGATAAACTGGATCTGAAGACTGTACCATACCGATTTTACAAAGGTTTTCGAGCTCTTACTCGGGCCGGAGAATTTGAAGTAAGATCATAATTTCAGATCTACCTACCATAAGTCATATGTATAGTGTGGATATGAAATTTTCTTGGCTGTAATAACATTGTGTGGTTTCTTTTGTATCATTATAAGATGATTATGTTTTATTCTGGTCATGAGTTATTCTTTGATGAACCTTACCATGGTTATCTGACTGAATCTCGTGACTATCAATGGAGTTATTCTTTGATGAACCTTACCGTTACCACTATCAAGTGGAGCAAACCTCTGCATTCCTATTCAAATAGTACTGTGTAATTTGTTCCAGCAGCCATGATGGCATGTAGTATGTCAAAGCTTTGTTGAGATATACAAAATATTCATGCTCTTAA
Coding sequences of Glyma.10g145500
>Glyma.10g145500.1 sequence-type=CDS polypeptide=Glyma.10g145500.1.p locus=Glyma.10g145500 ID=Glyma.10g145500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCAGTGCATATTTCTCGTGTCAGATGCCGGAGAGGTAATGTTAGAGAAACAGCTCACGGGGCACCGCGTGGATCGCTCCATCTGTGCCTGGTTCTGGGAACAAGCCATTTCACTAGGCGACTCCTTCAAGCAACAACCGGTGATTGCTTCTCCTACGCATTATATTTTCCAAGTTTTTCGTGATGGAATCACTTTTTTGGGCTGCACGCAAGTTGAAATGCCACCCTTGATGGCCATTGAGTTCCTTTGTAGGGTAGCCAATGTCCTCAATGATTATTTTGGGGCCTTAAACGAGGACATAATTAAAGACAACTTTGTCATTGTGTACGAGCTGTTGGATGAGATGATAGACAATGGCTTCCCCTTAACTACAGAACCTAGTATCCTGCGAGAAATGATTACTCCGCCGAATATGGTTGACAAAGCCTTGAGCATCGTCACTGGTAGCAGTTCAAATGTGAGTGATACCCTTCCTGGGGCTGCAGCATCTTGTGTTCCCTGGAGAACGGCAGAGCCAAAGTACTCCAACAATGAAGTCTATGTAGACCTTGTTGAAGAAATGGATGCAATTATAAACAGGGACGGGGGTTTGGTGAAATGTGAGATCTATGGTGAAGTCCAAGTAAATTCCCGGATCTCAGGTTTTCCTGATTTAACCCTTTCATTTACAAATCCTTCCATCCTCAATGATGTGAGGTTCCATCCCTGTGTTCGTTTTCGGCCTTGGGAGTCTCATCAAATTCTTTCCTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAGTTAGAAAGTTGAAGAGCACCCCAATATATGTAAAGCCGCAGTTAACTTCAGATGGTGGGATATGCCGTGTTAGTGTATTGGCTGGAATAAGAAATGATCCTGGAAAGACAATTGATTCGGTTACTGTTCAGTTTCAGCTCCCTCCTTTCATCTTATCAGCTGATCTTACTTCAAATCATGGAACAGTGAACATCCTTGCTAAACAGACTTGCATATGGTCCATTGGTCGAATCCCAAAAGACAAAACCCCTTCCTTGTCTGGAACATTAGTGATTGAAACTGGATTGGAGCGCCTTCATGTCTTCCCTACATTTCAAGTGGGTTTTAGGATTATGGGTGTCGCCCTGTCTGGTCTGCAAATAGATAAACTGGATCTGAAGACTGTACCATACCGATTTTACAAAGGTTTTCGAGCTCTTACTCGGGCCGGAGAATTTGAAGTAAGATCATAA

>Glyma.10g145500.2 sequence-type=CDS polypeptide=Glyma.10g145500.2.p locus=Glyma.10g145500 ID=Glyma.10g145500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGAGAAACAGCTCACGGGGCACCGCGTGGATCGCTCCATCTGTGCCTGGTTCTGGGAACAAGCCATTTCACTAGGCGACTCCTTCAAGCAACAACCGGTGATTGCTTCTCCTACGCATTATATTTTCCAAGTTTTTCGTGATGGAATCACTTTTTTGGGCTGCACGCAAGTTGAAATGCCACCCTTGATGGCCATTGAGTTCCTTTGTAGGGTAGCCAATGTCCTCAATGATTATTTTGGGGCCTTAAACGAGGACATAATTAAAGACAACTTTGTCATTGTGTACGAGCTGTTGGATGAGATGATAGACAATGGCTTCCCCTTAACTACAGAACCTAGTATCCTGCGAGAAATGATTACTCCGCCGAATATGGTTGACAAAGCCTTGAGCATCGTCACTGGTAGCAGTTCAAATGTGAGTGATACCCTTCCTGGGGCTGCAGCATCTTGTGTTCCCTGGAGAACGGCAGAGCCAAAGTACTCCAACAATGAAGTCTATGTAGACCTTGTTGAAGAAATGGATGCAATTATAAACAGGGACGGGGGTTTGGTGAAATGTGAGATCTATGGTGAAGTCCAAGTAAATTCCCGGATCTCAGGTTTTCCTGATTTAACCCTTTCATTTACAAATCCTTCCATCCTCAATGATGTGAGGTTCCATCCCTGTGTTCGTTTTCGGCCTTGGGAGTCTCATCAAATTCTTTCCTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAGTTAGAAAGTTGAAGAGCACCCCAATATATGTAAAGCCGCAGTTAACTTCAGATGGTGGGATATGCCGTGTTAGTGTATTGGCTGGAATAAGAAATGATCCTGGAAAGACAATTGATTCGGTTACTGTTCAGTTTCAGCTCCCTCCTTTCATCTTATCAGCTGATCTTACTTCAAATCATGGAACAGTGAACATCCTTGCTAAACAGACTTGCATATGGTCCATTGGTCGAATCCCAAAAGACAAAACCCCTTCCTTGTCTGGAACATTAGTGATTGAAACTGGATTGGAGCGCCTTCATGTCTTCCCTACATTTCAAGTGGGTTTTAGGATTATGGGTGTCGCCCTGTCTGGTCTGCAAATAGATAAACTGGATCTGAAGACTGTACCATACCGATTTTACAAAGGTTTTCGAGCTCTTACTCGGGCCGGAGAATTTGAAGTAAGATCATAA
Predicted protein sequences of Glyma.10g145500
>Glyma.10g145500.1.p sequence-type=predicted peptide transcript=Glyma.10g145500.1 locus=Glyma.10g145500 ID=Glyma.10g145500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLQCIFLVSDAGEVMLEKQLTGHRVDRSICAWFWEQAISLGDSFKQQPVIASPTHYIFQVFRDGITFLGCTQVEMPPLMAIEFLCRVANVLNDYFGALNEDIIKDNFVIVYELLDEMIDNGFPLTTEPSILREMITPPNMVDKALSIVTGSSSNVSDTLPGAAASCVPWRTAEPKYSNNEVYVDLVEEMDAIINRDGGLVKCEIYGEVQVNSRISGFPDLTLSFTNPSILNDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLTSDGGICRVSVLAGIRNDPGKTIDSVTVQFQLPPFILSADLTSNHGTVNILAKQTCIWSIGRIPKDKTPSLSGTLVIETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS*

>Glyma.10g145500.2.p sequence-type=predicted peptide transcript=Glyma.10g145500.2 locus=Glyma.10g145500 ID=Glyma.10g145500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEKQLTGHRVDRSICAWFWEQAISLGDSFKQQPVIASPTHYIFQVFRDGITFLGCTQVEMPPLMAIEFLCRVANVLNDYFGALNEDIIKDNFVIVYELLDEMIDNGFPLTTEPSILREMITPPNMVDKALSIVTGSSSNVSDTLPGAAASCVPWRTAEPKYSNNEVYVDLVEEMDAIINRDGGLVKCEIYGEVQVNSRISGFPDLTLSFTNPSILNDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLTSDGGICRVSVLAGIRNDPGKTIDSVTVQFQLPPFILSADLTSNHGTVNILAKQTCIWSIGRIPKDKTPSLSGTLVIETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo