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Report for Sequence Feature Glyma.10g144700

Feature Type:gene_model
Chromosome:Gm10
Start:37951981
stop:37953400
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g144700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G26749.1AT C2H2 and C2HC zinc fingers superfamily protein JGI N/AIEA
GO:0005689GO-cc U12-type spliceosomal complex EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
PTHR16465Panther NUCLEASE-RELATED JGI N/AIEA
PF00642PFAM Zinc finger C-x8-C-x5-C-x3-H type (and similar) JGI N/AIEA
PF06220PFAM U1 zinc finger JGI N/AIEA

Expression Patterns of Glyma.10g144700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g144700
ParalogEvidenceComments
Glyma.20g093700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g144700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g28540 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g144700
>Glyma.10g144700.2 sequence-type=transcript locus=Glyma.10g144700 ID=Glyma.10g144700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTCACGCTCCCTGTATTTTATGCAAATTATATAAGATTGAAAGCGTGAGAATGCCGGTGAAGAAGTATTACTGCGATTACTGCGACAAGCTATTCCAAGACACACCAGCAGATCGGAAACGACACGTTCAGGGCATTCAACACCACCAAGCCAAAGCTCGCTGGTACGATTCCTTCAAACAACAACAAATCCCTCCGATTCCCAATCGACCCCTTTGCTTTCACTTCGTCAACACGGGATTTTGCCGCTACGGCGACTCTTGCAAATATCTCCATCCCGTTCCCAACAACAATGTCCAGCAGCCGCCAATCGTAACCACACCGTCGCCTTCACCAGGGAGTGTGGTAGGAGTGTCATTCGGCAATCTTCCCCCCTCCCTGCAGCCTCCGCCTGACGGCGTATATCTCCACCTTCCCTTTCTCGACTGGGGATAGATTTGTAATTCTACCCACTTCTCATAACTGCATCTCCGTGTCTGTGTTCTGTTCAATCATTTCTTAATTTAACCTTTTAGTTCTTCTAATTTTCATTGTGTGGCTGGATTCTAGTGATTTCTTATGACCTAGCTCCACCGTATTATTTGGAGTTTTCTTATATCTACCCAACGCTTAACTTATGATTAAATCCAAAATCTATCTTATTGTAATACAGTATGATAATAGACTGCTGAGTTTGCTTTAACACATACATTTATAAGCATTTTTCACCTGAAGCAGCCTGGAGCCCTGGACAGTATTATCCACCAGTTTTCACTTCACGACGCTGTTATTGGCAGTGATGCCAATAACTTTAAAAAAAGattcatttttact
Coding sequences of Glyma.10g144700
>Glyma.10g144700.1 sequence-type=CDS polypeptide=Glyma.10g144700.1.p locus=Glyma.10g144700 ID=Glyma.10g144700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGGTGAAGAAGTATTACTGCGATTACTGCGACAAGCTATTCCAAGACACACCAGCAGATCGGAAACGACACGTTCAGGGCATTCAACACCACCAAGCCAAAGCTCGCTGGTACGATTCCTTCAAACAACAACAAATCCCTCCGATTCCCAATCGACCCCTTTGCTTTCACTTCGTCAACACGGGATTTTGCCGCTACGGCGACTCTTGCAAATATCTCCATCCCGTTCCCAACAACAATGTCCAGCAGCCGCCAATCGTAACCACACCGTCGCCTTCACCAGGGAGTGTGGTAGGAGTGTCATTCGGCAATCTTCCCCCCTCCCTGCAGCCTCCGCCTGACGGCGTATATCTCCACCTTCCCTTTCTCGACTGGGGATAG

>Glyma.10g144700.2 sequence-type=CDS polypeptide=Glyma.10g144700.2.p locus=Glyma.10g144700 ID=Glyma.10g144700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGGTGAAGAAGTATTACTGCGATTACTGCGACAAGCTATTCCAAGACACACCAGCAGATCGGAAACGACACGTTCAGGGCATTCAACACCACCAAGCCAAAGCTCGCTGGTACGATTCCTTCAAACAACAACAAATCCCTCCGATTCCCAATCGACCCCTTTGCTTTCACTTCGTCAACACGGGATTTTGCCGCTACGGCGACTCTTGCAAATATCTCCATCCCGTTCCCAACAACAATGTCCAGCAGCCGCCAATCGTAACCACACCGTCGCCTTCACCAGGGAGTGTGGTAGGAGTGTCATTCGGCAATCTTCCCCCCTCCCTGCAGCCTCCGCCTGACGGCGTATATCTCCACCTTCCCTTTCTCGACTGGGGATAG
Predicted protein sequences of Glyma.10g144700
>Glyma.10g144700.1.p sequence-type=predicted peptide transcript=Glyma.10g144700.1 locus=Glyma.10g144700 ID=Glyma.10g144700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPVKKYYCDYCDKLFQDTPADRKRHVQGIQHHQAKARWYDSFKQQQIPPIPNRPLCFHFVNTGFCRYGDSCKYLHPVPNNNVQQPPIVTTPSPSPGSVVGVSFGNLPPSLQPPPDGVYLHLPFLDWG*

>Glyma.10g144700.2.p sequence-type=predicted peptide transcript=Glyma.10g144700.2 locus=Glyma.10g144700 ID=Glyma.10g144700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPVKKYYCDYCDKLFQDTPADRKRHVQGIQHHQAKARWYDSFKQQQIPPIPNRPLCFHFVNTGFCRYGDSCKYLHPVPNNNVQQPPIVTTPSPSPGSVVGVSFGNLPPSLQPPPDGVYLHLPFLDWG*






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