SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g139800

Feature Type:gene_model
Chromosome:Gm10
Start:37338285
stop:37339737
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g139800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62020.1AT germin-like protein 10 JGI N/AIEA
GO:0010497GO-bp plasmodesmata-mediated intercellular transport EnsemblGenomesN/AIEA
GO:2000280GO-bp regulation of root development EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall EnsemblGenomesN/AIEA
GO:0009506GO-cc plasmodesma EnsemblGenomesN/AIEA
GO:0030145GO-mf manganese ion binding EnsemblGenomesN/AIEA
GO:0045735GO-mf nutrient reservoir activity EnsemblGenomesN/AIEA
GO:0045735GO-mf nutrient reservoir activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF00190PFAM Cupin JGI N/AIEA

Proteins Associated with Glyma.10g139800
LocusGene SymbolProtein Name
GER17 germin-like protein 17

Expression Patterns of Glyma.10g139800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g139800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g28020 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g139800
>Glyma.10g139800.1 sequence-type=CDS polypeptide=Glyma.10g139800.1.p locus=Glyma.10g139800 ID=Glyma.10g139800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACCAACAAACACTTTTGCAATTTTGGTCTTCTTCTGCTGTGCCATTTCCTTTACCTTCGCTTCTGACCCTGACACACTTCAAGACCTTTGTGTGGCACTTCCCTCTTCAGGTGTGAAGGTGAATGGATTTGCTTGCAAGGCTGAGTCAAATGTAACAGAAGCTGATTTCTTCTTTGCTGGTTTAGCCAAGCCTGGAGCTACCAACAACACATTGGGATCTGTAGTTACTGCAGCCAATGTGGATAAAATTCCAGGACTCAACACATTGGGAGTGTCATTCTCAAGAATAGACTACAAAGCTGGGGGACTTAACCCACCTCACACACACCCTCGAGCCACTGAGATTGTGTTTGTGTTGGATGGACAACTAGATGTTGGATTCATCACCACAGCCAACAAACTCATCTCAAAGTCCATTAATAAGGGTGAAATCTTTGTGTTCCCAAAAGGTTTGGTGCACTATCAGAAGAACAATGGGGATAAGCCTGCTTCTGTGCTTTCTGCCTTCAACAGCCAACTCCCTGGCACAGTGTCTATAGCTGCAACTCTTTTCACTTCAACACCAACTGTGCCTCATAATGTTCTTTCTCAGGCCTTCCAGATTGATGCTAAACTGGTTGATGACATCAAGGCCAAGCTTGCTCCTAAGAAGACTTAA
Predicted protein sequences of Glyma.10g139800
>Glyma.10g139800.1.p sequence-type=predicted peptide transcript=Glyma.10g139800.1 locus=Glyma.10g139800 ID=Glyma.10g139800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSPTNTFAILVFFCCAISFTFASDPDTLQDLCVALPSSGVKVNGFACKAESNVTEADFFFAGLAKPGATNNTLGSVVTAANVDKIPGLNTLGVSFSRIDYKAGGLNPPHTHPRATEIVFVLDGQLDVGFITTANKLISKSINKGEIFVFPKGLVHYQKNNGDKPASVLSAFNSQLPGTVSIAATLFTSTPTVPHNVLSQAFQIDAKLVDDIKAKLAPKKT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo