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Report for Sequence Feature Glyma.10g133700

Feature Type:gene_model
Chromosome:Gm10
Start:35863186
stop:35884173
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g133700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G33340.1AT MOS4-associated complex 3B JGI N/AIEA
GO:0000349GO-bp generation of catalytic spliceosome for first transesterification step EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0016575GO-bp histone deacetylation EnsemblGenomesN/AIEA
GO:1903507GO-bp negative regulation of nucleic acid-templated transcription EnsemblGenomesN/AIEA
GO:0000118GO-cc histone deacetylase complex EnsemblGenomesN/AIEA
GO:0000974GO-cc Prp19 complex EnsemblGenomesN/AIEA
GO:0071006GO-cc U2-type catalytic step 1 spliceosome EnsemblGenomesN/AIEA
GO:0003714GO-mf transcription corepressor activity EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG0289 KOG mRNA splicing factor JGI N/AIEA
PTHR13889Panther PRE-MRNA SPLICING FACTOR PRP19-RELATED JGI N/AIEA
PTHR13889:SF9Panther JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA
PF08606PFAM Prp19/Pso4-like JGI N/AIEA

Expression Patterns of Glyma.10g133700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g133700
ParalogEvidenceComments
Glyma.20g084500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g133700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g26870 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g133700
>Glyma.10g133700.1 sequence-type=CDS polypeptide=Glyma.10g133700.1.p locus=Glyma.10g133700 ID=Glyma.10g133700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATTGCTCCATCTCCGGCGAAGTTCCGGAAGATCCCGTCGTGTCCCGGAACTCCGGTCTCCTCTTCGAGAAGCGTTTGATTGAGCGACACATCTCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGATGACATTGTACCAATCAAGACAGGCAAGATAGTGAAACCCAGACCTGTTCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGACAGGAGCTGAGTCATGCTCTGTATCAGCATGATGCCGCTTGCCGAGTTATTGCAAGACTAAAAAAGGAACGAGATGAAGCTAGGTCTGTACTTGCACAAGCAGAAAGGCAGTTCCCTGCTTCTGCACCAAATGCCATAACAGCAAATGACCCTGTCCTGAGCAACGGGAAAAGAGCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCATAATTTCCGAGCTAACTGATTGCAATGCTTCTCTTTCCCAGCAGAGAAAGAAGCGACAGATTCCTGCAACTTTGGCTCCTGTTGAAGCTCTAGAGGCATATACCCAGATATCTAGTCACCCCTTTCACAAAACAAACAAACAAGGGATTATATCTCTTGATATCCTTTATTCTAAGGATTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGACCATCAGGACAGATATTAGCTACGCTCAGTGGTCACTCTAAAAAGGTGACCAGTGTAAAGTTTGTAGCTCAGGGTGAATCATTCTTAACTGCTTCAGCAGATAAGACAGTTCGACTATGGCAAGGGTCAGATGATGGTAACTACAACTGCAGGCACATCTTAAAGGATCATACAGCTGAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTACTTTGTGACTGCTTCACTTGACGGCTCTTGGTGCTTTTATGAACTTTCTTCAGGGACATGTCTGACTCAGGTTTATGACACTTCAGGTTCTTCTGAAGGGTACACTTCTGCAGCTTTTCATCCTGATGGTCTTATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGATTTGGGACGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGATGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGTGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAGGATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCCGGAACAGGGAAGAACACGTGTGTAAAATTTGGTTCAGATTCTAAATACATAGCAGTGGGATCAATGGACCGGAATCTTCGGATATTCGGCTTGCCTGGCGAAGATGCTCCTACTGAGTCATAA
Predicted protein sequences of Glyma.10g133700
>Glyma.10g133700.1.p sequence-type=predicted peptide transcript=Glyma.10g133700.1 locus=Glyma.10g133700 ID=Glyma.10g133700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNCSISGEVPEDPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSVLAQAERQFPASAPNAITANDPVLSNGKRAAEDEDLAPGAKKIHPGISSSIISELTDCNASLSQQRKKRQIPATLAPVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIATGGIDTNAVIFDRPSGQILATLSGHSKKVTSVKFVAQGESFLTASADKTVRLWQGSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVYDTSGSSEGYTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTSSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKNTCVKFGSDSKYIAVGSMDRNLRIFGLPGEDAPTES*






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