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Report for Sequence Feature Glyma.10g126200

Feature Type:gene_model
Chromosome:Gm10
Start:33430366
stop:33432117
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g126200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30510.1AT homolog of yeast autophagy 18 (ATG18) B JGI N/AIEA
GO:0000422GO-bp autophagy of mitochondrion EnsemblGenomesN/AIEA
GO:0006497GO-bp protein lipidation EnsemblGenomesN/AIEA
GO:0034497GO-bp protein localization to phagophore assembly site EnsemblGenomesN/AIEA
GO:0044804GO-bp autophagy of nucleus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0019898GO-cc extrinsic component of membrane EnsemblGenomesN/AIEA
GO:0034045GO-cc phagophore assembly site membrane EnsemblGenomesN/AIEA
GO:0032266GO-mf phosphatidylinositol-3-phosphate binding EnsemblGenomesN/AIEA
GO:0080025GO-mf phosphatidylinositol-3,5-bisphosphate binding EnsemblGenomesN/AIEA
PTHR11227Panther WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES (WIPI)-RELATED JGI N/AIEA
PTHR11227:SF17Panther AUTOPHAGY-SPECIFIC GENE 18, ISOFORM A JGI N/AIEA

Expression Patterns of Glyma.10g126200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g126200 not represented in the dataset
Glyma.10g126200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g126200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g25246 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g126200
>Glyma.10g126200.1 sequence-type=CDS polypeptide=Glyma.10g126200.1.p locus=Glyma.10g126200 ID=Glyma.10g126200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAACCATTCTTCTTTGCCATCTTTACTTTGCGCTTCTTTCAACCAAGACCATAGTTACTTTGTCGTTGGCACCAAAGATGGTGTTAGAATATTTGATACCAATACAGGAAGACTTTGTTATCAAAAGATAAAATTCACAGTTAGAGCTTTTGTTATTGCTGAGATGTTGTTTAGCTCCAGTCTTCTTGCTATCATCAGAGCCGGTGATCAACCATCTTTGTCCCCTTGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTATTAGAGAATTGAATTTTTTAACTTCCATACTTGATGTTTGCATGAATAGACAAAGACTCATTGTCATTTTACAAGACAAAGCATATGCATATGAAATAAATAGTCTCATAATCTTGGATACTATTGACACAATGCCAAATATTAAAGGTGAGGCTGGAACCAATACCTGA
Predicted protein sequences of Glyma.10g126200
>Glyma.10g126200.1.p sequence-type=predicted peptide transcript=Glyma.10g126200.1 locus=Glyma.10g126200 ID=Glyma.10g126200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANHSSLPSLLCASFNQDHSYFVVGTKDGVRIFDTNTGRLCYQKIKFTVRAFVIAEMLFSSSLLAIIRAGDQPSLSPCRLCLFNTTTGAAIRELNFLTSILDVCMNRQRLIVILQDKAYAYEINSLIILDTIDTMPNIKGEAGTNT*






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