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Report for Sequence Feature Glyma.10g125100

Feature Type:gene_model
Chromosome:Gm10
Start:32691533
stop:32700120
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g125100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G13720.1AT Inosine triphosphate pyrophosphatase family protein JGI N/AIEA
GO:0009117GO-bp nucleotide metabolic process EnsemblGenomesN/AIEA
GO:0009143GO-bp nucleoside triphosphate catabolic process EnsemblGenomesN/AIEA
GO:0009204GO-bp deoxyribonucleoside triphosphate catabolic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004551GO-mf nucleotide diphosphatase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0035529GO-mf NADH pyrophosphatase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0047429GO-mf nucleoside-triphosphate diphosphatase activity EnsemblGenomesN/AIEA
KOG3222 KOG Inosine triphosphate pyrophosphatase JGI N/AIEA
PTHR11067Panther INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN JGI N/AIEA
PF01725PFAM Ham1 family JGI N/AIEA
PWY-7184SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-7187SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis II Plant Metabolic Network ISS
PWY-7206SoyCyc9 pyrimidine deoxyribonucleotides dephosphorylation Plant Metabolic Network ISS
PWY-7211SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY0-166SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) Plant Metabolic Network ISS
GN7V-68428SoyCyc9-rxn nucleoside triphosphate pyrophosphohydrolase Plant Metabolic Network ISS

Expression Patterns of Glyma.10g125100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g125100 not represented in the dataset
Glyma.10g125100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g125100
ParalogEvidenceComments
Glyma.20g077400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g125100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Transcripts of Glyma.10g125100
>Glyma.10g125100.2 sequence-type=transcript locus=Glyma.10g125100 ID=Glyma.10g125100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAAGAAAAGGTTACAAAAAATCAAACAAGTTCACATTTGCACATCACACAGCAGTCAGCACAGTGCCGCCGCCGTAGTGGGAAGCCATCGTCGACTCGGCGAAAAGTCCTACAAGATTTGGGAAATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTGACGGGCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCTATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTACAAGGAGAGCCTGAAGATATATCCAAAGAGAAGGCTCGGATGGCTGCTGTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCTTATGCCTTATGTGTATTTTCGTTTGCAGCTGGTTCAAACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGGAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCACAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTAAAATCTCATTTTGCTGAAGCTGGATATACTTTTGACATCAAGAACGTCTGAAAGCTGAATGTGGGTCTTGGATTCGCCACTGATCAGGATGGTGGGGTCGTTGCTGATGCCACTGTAACCCGTGAACGCCTTGTAGGTTTCATACGGGGTGTTAAGAATGATTGTTGTTCTTCGTCATTGTCTATTAGAGTTGTAACTAAATTTTCCCACCGTAGCTTGTGTCCCAAAAATAGGCTAATCTTATAAGTTTATAGATGTTTTGGTTTGAACAAAATTGCTTCAAGAGAATAAAAGATAGAGCTTAATTGATACACAGCATCAGTGTAAAGTCTTTAACATGCAATAATCTTTTGACTATTATACTAA

>Glyma.10g125100.3 sequence-type=transcript locus=Glyma.10g125100 ID=Glyma.10g125100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAATCAAACAAGTTCACATTTGCACATCACACAGCAGTCAGCACAGTGCCGCCGCCGTAGTGGGAAGCCATCGTCGACTCGGCGAAAAGTCCTACAAGATTTGGGAAATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTGACGGGCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCTATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTACAAGGAGAGCCTGAAGATATATCCAAAGAGAAGGCTCGGATGGCTGCTGTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCTTATGCCTTATGTGTATTTTCGTTTGCAGCTGGTTCAAACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGGAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCACAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTAAAATCTCATTTTGCTGAAGCTGGATATACTTTTGACATCAAGAACGTCTGAAAGCTGAATGTGGTAAATTATAGGCAACATGCTCTTTATTAAATTTCCCTTGAAATTGAAGGGAAATTGTTTCTAGCAGTAGCAATGTGGGAATTATTTTGAACTTAAATGTTGCTTTTGTTTACAACTTATCCAGCAAGAGAGAATAAAAAACCAAAATTAGAAAAATATACCAAAAAAGGGCGTAGACTACAGTGGTTAAGTATGTGAATTTGTGTATGATGTACAATTTTTTTTAACCATTAGATAAGATTTATTCACAAATCTCTATGGTACGTCTTTTGCACCATATACCTTCTCATCCCTATCTTTTTCCCTAACCCTCTCCCATGGTCTTCTCTCCCCTTCCTTCTGATCCCCTGGTCCTCGTCCCTCTCCCTATGCCACCATTCCAACGAATTAGATTGGGAGGGTCTCCACGTAAGGGGAAAGGCGGCAAACAAGAATGTGTTTGCAGTGGTTCGCACGGAGTCGGTAGCAAGTCACACGACAGCGACAATGGGTTCCATTCTTGGAACCAAAAGTTCTCTATGAAGTTGGGGCAGCACACGAGGTGTGTGACGATTGAGGTGAAGTGCAAGTCGGGAGTGGGAGTCGTGAGAGATGTTGGCGTGGTGAGAATTGCAGTTTCGAATCTTCTTGGAGGGTTGGTGATCATTGCTTGCAGTTTGTGTTACAGATTAAGGAATTAGGATGGCAGAGGAAACGAGATTGTGAATTTCTGTCAGGGGTCTTGGATTCGCCACTGATCAGGATGGTGGGGTCGTTG

>Glyma.10g125100.4 sequence-type=transcript locus=Glyma.10g125100 ID=Glyma.10g125100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAATCAAACAAGTTCACATTTGCACATCACACAGCAGTCAGCACAGTGCCGCCGCCGTAGTGGGAAGCCATCGTCGACTCGGCGAAAAGTCCTACAAGATTTGGGAAATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTGACGGGCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCTATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTACAAGGAGAGCCTGAAGATATATCCAAAGAGAAGGCTCGGATGGCTGCTGTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCTTATGCCTTATGTGTATTTTCGTTTGCAGCTGGTTCAAACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGGAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCACAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTAAAATCTCATTTTGCTGAAGCTGGATATACTTTTGACATCAAGAACGTCTGAAAGCTGAATGTGGTAAATTATAGGCAACATGCTCTTTATTAAATTTCCCTTGAAATTGAAGGGAAATTGTTTCTAGCAGTAGCAATGTGGGAATTATTTTGAACTTAAATGTTGCTTTTGTTTACAACTTATCCAGCAAGAGAGAATAAAAAACCAAAATTAGAAAAATATACCAAAAAAGGGCGTAGACTACAGTGGTTAAGTATGTGAATTTGTGTATGATGTACAATTTTTTTTAACCATTAGATAAGATTTATTCACAAATCTCTATGGTACGTCTTTTGCACCATATACCTTCTCATCCCTATCTTTTTCCCTAACCCTCTCCCATGGTCTTCTCTCCCCTTCCTTCTGATCCCCTGGTCCTCGTCCCTCTCCCTATGCCACCATTCCAACGAATTAGATTGGGAGGGTCTCCACGTAAGGGGAAAGGCGGCAAACAAGAATGTGTTTGCAGTGGTTCGCACGGAGTCGGTAGCAAGTCACACGACAGCGACAATGGGTTCCATTCTTGGAACCAAAAGTTCTCTATGAAGTTGGGGCAGCACACGAGGTGTGTGACGATTGAGGTGAAGTGCAAGTCGGGAGTGGGAGTCGTGAGAGATGTTGGCGTGGTGAGAATTGCAGTTTCGAATCTTCTTGGAGGGTTGGTGATCATTGCTTGCAGTTTGTGTTACAGATTAAGGAATTAGGATGGCAGAGGAAACGAGATTGTGAATTTCTGTCAGGGTCAGTGGCAGACTTACATTGGACTGAGTTGCACTCTCTCATTTTTTAAAATTTACTAAATTTGTAAATAAAATCTTAtatttttatattttattttatttatatttatatAATTG
Coding sequences of Glyma.10g125100
>Glyma.10g125100.1 sequence-type=CDS polypeptide=Glyma.10g125100.1.p locus=Glyma.10g125100 ID=Glyma.10g125100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTGACGGGCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCTATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTACAAGGAGAGCCTGAAGATATATCCAAAGAGAAGGCTCGGATGGCTGCTGTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCTTATGCCTTATGTGTATTTTCGTTTGCAGCTGGTTCAAACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGGAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCACAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGGTCTTGGATTCGCCACTGATCAGGATGGTGGGGTCGTTGCTGATGCCACTGTAACCCGTGAACGCCTTGTAGGTTTCATACGGGGTGTTAAGAATGATTGTTGTTCTTCGTCATTGTCTATTAGAGTTGTAACTAAATTTTCCCACCGTAGCTTGTGTCCCAAAAATAGGCTAATCTTATAA

>Glyma.10g125100.2 sequence-type=CDS polypeptide=Glyma.10g125100.2.p locus=Glyma.10g125100 ID=Glyma.10g125100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTGACGGGCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCTATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTACAAGGAGAGCCTGAAGATATATCCAAAGAGAAGGCTCGGATGGCTGCTGTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCTTATGCCTTATGTGTATTTTCGTTTGCAGCTGGTTCAAACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGGAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCACAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTAAAATCTCATTTTGCTGAAGCTGGATATACTTTTGACATCAAGAACGTCTGA

>Glyma.10g125100.3 sequence-type=CDS polypeptide=Glyma.10g125100.3.p locus=Glyma.10g125100 ID=Glyma.10g125100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTGACGGGCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCTATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTACAAGGAGAGCCTGAAGATATATCCAAAGAGAAGGCTCGGATGGCTGCTGTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCTTATGCCTTATGTGTATTTTCGTTTGCAGCTGGTTCAAACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGGAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCACAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTAAAATCTCATTTTGCTGAAGCTGGATATACTTTTGACATCAAGAACGTCTGA

>Glyma.10g125100.4 sequence-type=CDS polypeptide=Glyma.10g125100.4.p locus=Glyma.10g125100 ID=Glyma.10g125100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTGACGGGCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCTATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTACAAGGAGAGCCTGAAGATATATCCAAAGAGAAGGCTCGGATGGCTGCTGTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCTTATGCCTTATGTGTATTTTCGTTTGCAGCTGGTTCAAACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGGAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCACAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTAAAATCTCATTTTGCTGAAGCTGGATATACTTTTGACATCAAGAACGTCTGA
Predicted protein sequences of Glyma.10g125100
>Glyma.10g125100.1.p sequence-type=predicted peptide transcript=Glyma.10g125100.1 locus=Glyma.10g125100 ID=Glyma.10g125100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAARGLVLSRPVTFVTGNAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARMAAVQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGSNSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALGLGFATDQDGGVVADATVTRERLVGFIRGVKNDCCSSSLSIRVVTKFSHRSLCPKNRLIL*

>Glyma.10g125100.2.p sequence-type=predicted peptide transcript=Glyma.10g125100.2 locus=Glyma.10g125100 ID=Glyma.10g125100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAARGLVLSRPVTFVTGNAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARMAAVQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGSNSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEAGYTFDIKNV*

>Glyma.10g125100.3.p sequence-type=predicted peptide transcript=Glyma.10g125100.3 locus=Glyma.10g125100 ID=Glyma.10g125100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAARGLVLSRPVTFVTGNAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARMAAVQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGSNSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEAGYTFDIKNV*

>Glyma.10g125100.4.p sequence-type=predicted peptide transcript=Glyma.10g125100.4 locus=Glyma.10g125100 ID=Glyma.10g125100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAARGLVLSRPVTFVTGNAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARMAAVQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGSNSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEAGYTFDIKNV*






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