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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G60600.2 | AT | UbiA prenyltransferase family protein | JGI | N/A | IEA |
| GO:0032194 | GO-bp | ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | EnsemblGenomes | N/A | IEA |
| GO:0042371 | GO-bp | vitamin K biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0042372 | GO-bp | phylloquinone biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0004659 | GO-mf | prenyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0004659 | GO-mf | prenyltransferase activity | JGI | N/A | IEA |
| GO:0016765 | GO-mf | transferase activity, transferring alkyl or aryl (other than methyl) groups | EnsemblGenomes | N/A | IEA |
| PTHR13929 | Panther | 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE | JGI | N/A | IEA |
| PF01040 | PFAM | UbiA prenyltransferase family | JGI | N/A | IEA |
| PWY-5027 | SoyCyc9 | phylloquinol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5863 | SoyCyc9 | superpathway of phylloquinol biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-62146 | SoyCyc9-rxn | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | Plant Metabolic Network | ISS |
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Glyma.10g123800 not represented in the dataset |
Glyma.10g123800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g24476 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g123800.1 sequence-type=CDS polypeptide=Glyma.10g123800.1.p locus=Glyma.10g123800 ID=Glyma.10g123800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGGAAAGTTATTCAGGAGTCATTAACTTGCAATTTTCTGTGCTTGGCCAATTGTTGTTGCAGTGTCCACCATTTCGGTTAAGCTACCAGGGGCTGGGAGAGCCCTTGAGCTTTGCAGCATTTGGGCCTTTTGCCACTTGTGCTTTTTATTTATTACATGGCAGTTCAAGTGTGATGAACCATTTCCCCTTAAGTGGAACGGTTCTTTCAGCATCAATTCTTGTTGGCTTCACAACATCTCTTATCTTGTTTTGCAGTCATTTCCATCAGGTGGAAGGAGACAGGGAGGTTGGGAAAATGTCACCTTTGGTTAGACTTGGCACTAAAAAAGGTGCAGAGGTAGTGAAAGGGGCAATCTTTATGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAATCAAGGCACTTCCTCTCACTTGTATATTCCTTTGTGCATTGACCTTGCCGATGGGAAACCTAGTAGTTAGATTTGTCGAAGACAATTACAAGGCAATTGTATTCTCACATAACAAAAATAAGATTTTCATGGCTAAGTACTTCTGTGTGAGGCTTCATGCATTGTTTGGAGTTGCACTGGCTTTAGGACTAGTGCTGGCTCGAAAGAGTGTGGATGACCCTGGAAGACCCCCTGGCATTGTTCTTAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCTCCTAAACGAGTCTTTGACTTCCTCCGTGATGAAAACTCTAGGAATGAGGTATGTGCAACAAAAAGCTAA
>Glyma.10g123800.1.p sequence-type=predicted peptide transcript=Glyma.10g123800.1 locus=Glyma.10g123800 ID=Glyma.10g123800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLESYSGVINLQFSVLGQLLLQCPPFRLSYQGLGEPLSFAAFGPFATCAFYLLHGSSSVMNHFPLSGTVLSASILVGFTTSLILFCSHFHQVEGDREVGKMSPLVRLGTKKGAEVVKGAIFMLYALLVAFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKAIVFSHNKNKIFMAKYFCVRLHALFGVALALGLVLARKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEVCATKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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