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Report for Sequence Feature Glyma.10g115800

Feature Type:gene_model
Chromosome:Gm10
Start:28824201
stop:28825232
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g115800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G45130.1AT beta-galactosidase 5 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0005773GO-cc vacuole EnsemblGenomesN/AIEA
GO:0004190GO-mf aspartic-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004190GO-mf aspartic-type endopeptidase activity JGI N/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004565GO-mf beta-galactosidase activity EnsemblGenomesN/AIEA
PTHR23421Panther BETA-GALACTOSIDASE RELATED JGI N/AIEA
PTHR23421:SF33Panther JGI N/AIEA
PF09668PFAM Aspartyl protease JGI N/AIEA
GN7V-65843SoyCyc9-rxn β-galactosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.10g115800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g115800 not represented in the dataset
Glyma.10g115800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g115800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g22015 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g115800
>Glyma.10g115800.2 sequence-type=transcript locus=Glyma.10g115800 ID=Glyma.10g115800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTGATATCCTACCTTGTCAGTTCTCAGCATTTAATCTTACTGTTTTCTGGTTGGCATGATGCAGCGTTGACATAAGTTCATCCAAATCCTTTCTTCGAGGCGGACAAAAACCCAGCGTTAATGTGCAGTCTGCAGGACATACTGTTCCTGTGTTTGTTAATGGGCAATTTTCAGGACAAGGGAGCAGAGAAGTTGCACATAAAATGGACCCGTTGACCTACGCGTTGGAACTAACAAAATTGCTCTTGTAACTTCAACTTGGAGATATTTGATGGCTTATGCAAAGGGCAACTGTTGGATTTCAGAATGTTGGTCGGCATTATGAAACATGGGAGGCAGGGTTCACTGGTCCAGTTTTGCTCCATGGTCTTGACCAAGGACAGAAAGATTTGACGAGAAACAAGTGTTCATATAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCATTGGACTGGATATGCTCCGAAAGtgttggttaatttgaaaattgagatgatactggataaatctgaagtcttgtataacactttcagattgaatcaaatttcggggttcaaccaaaattgttcaatcggataaaatcagaagattataattcaa
Coding sequences of Glyma.10g115800
>Glyma.10g115800.1 sequence-type=CDS polypeptide=Glyma.10g115800.1.p locus=Glyma.10g115800 ID=Glyma.10g115800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAAGGGCAACTGTTGGATTTCAGAATGTTGGTCGGCATTATGAAACATGGGAGGCAGGGTTCACTGGTCCAGTTTTGCTCCATGGTCTTGACCAAGGACAGAAAGATTTGACGAGAAACAAGTGTTCATATAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCATTGGACTGGATATGCTCCGAAAGTGTTGGTTAATTTGA

>Glyma.10g115800.2 sequence-type=CDS polypeptide=Glyma.10g115800.2.p locus=Glyma.10g115800 ID=Glyma.10g115800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAAGGGCAACTGTTGGATTTCAGAATGTTGGTCGGCATTATGAAACATGGGAGGCAGGGTTCACTGGTCCAGTTTTGCTCCATGGTCTTGACCAAGGACAGAAAGATTTGACGAGAAACAAGTGTTCATATAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCATTGGACTGGATATGCTCCGAAAGTGTTGGTTAATTTGA
Predicted protein sequences of Glyma.10g115800
>Glyma.10g115800.1.p sequence-type=predicted peptide transcript=Glyma.10g115800.1 locus=Glyma.10g115800 ID=Glyma.10g115800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRATVGFQNVGRHYETWEAGFTGPVLLHGLDQGQKDLTRNKCSYKIGSIFYPCSFLVLDSPNMEFLIGLDMLRKCWLI*

>Glyma.10g115800.2.p sequence-type=predicted peptide transcript=Glyma.10g115800.2 locus=Glyma.10g115800 ID=Glyma.10g115800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRATVGFQNVGRHYETWEAGFTGPVLLHGLDQGQKDLTRNKCSYKIGSIFYPCSFLVLDSPNMEFLIGLDMLRKCWLI*






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