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Report for Sequence Feature Glyma.10g113400

Feature Type:gene_model
Chromosome:Gm10
Start:27492850
stop:27497660
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g113400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72550.1AT tRNA synthetase beta subunit family protein JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0006432GO-bp phenylalanyl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0009328GO-cc phenylalanine-tRNA ligase complex EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004826GO-mf phenylalanine-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
PTHR10947Panther PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA
PF01486PFAM K-box region JGI N/AIEA

Expression Patterns of Glyma.10g113400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g113400 not represented in the dataset
Glyma.10g113400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g113400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g13221 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g113400
>Glyma.10g113400.1 sequence-type=CDS polypeptide=Glyma.10g113400.1.p locus=Glyma.10g113400 ID=Glyma.10g113400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGAAAATTTGAAGAAACTGAAAGAGGTGAATAGGAATCTTCGTAAGGAGATTAGGCAGAGAATGGGAGATTGTATGAATGATCTAGGCTTAGAAGATCTCAAGCTCCTTGAGGAAGAAATGGACAAGGCTGCCAAGGTTGTTCGTGAGTGTAAGGCAACGAAATTTAATGATGTTAAATCAAGCAAAGGCTCTCCATACTGGATGGCCCTTGAGGTTTCTAACTTAAAGAACCAAGGTGGTTATGGGCTAGCAGTTGATATATGGAGCTTAGGGTGTACAGTTTTGGAGATGTTGACAAGGCAGCCTCCTTATTCTGAGTTGGAAGGAGTGCTGCCTCCTATAGCACAAAAGCACGTGATTCAACTCATACTTTCTCACGAAAGAAACTTCAGGGCTGATGAGCTAATGGAGTTCTACAAACCATCACTTTGGAGACAGAATATATTTATTGAATGTACTGCAACTGATCTGACAAAAGTGAAAGTTGTTTTGAATACAATGGTAATAGCCTTCTCAGAATATTGTGAAAACAAATTTGTCATTGAACCAGTTGAAGTTATTTTTTCTGATGGTAACTCAAACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCATTGGAAGCAGAAGAGGTAATTATTTTGCTGCTTCATATGAGTGGCGTGATCCTGCACTTGCAAATTGACTATTGA
Predicted protein sequences of Glyma.10g113400
>Glyma.10g113400.1.p sequence-type=predicted peptide transcript=Glyma.10g113400.1 locus=Glyma.10g113400 ID=Glyma.10g113400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQENLKKLKEVNRNLRKEIRQRMGDCMNDLGLEDLKLLEEEMDKAAKVVRECKATKFNDVKSSKGSPYWMALEVSNLKNQGGYGLAVDIWSLGCTVLEMLTRQPPYSELEGVLPPIAQKHVIQLILSHERNFRADELMEFYKPSLWRQNIFIECTATDLTKVKVVLNTMVIAFSEYCENKFVIEPVEVIFSDGNSNIYPDLSVYNMEVSLSYITGLIGVSLEAEEVIILLLHMSGVILHLQIDY*






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