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Report for Sequence Feature Glyma.10g112700

Feature Type:gene_model
Chromosome:Gm10
Start:27236594
stop:27239785
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g112700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G50480.1AT 10-formyltetrahydrofolate synthetase JGI N/AIEA
GO:0009113GO-bp purine nucleobase biosynthetic process EnsemblGenomesN/AIEA
GO:0009257GO-bp 10-formyltetrahydrofolate biosynthetic process EnsemblGenomesN/AIEA
GO:0009396GO-bp folic acid-containing compound biosynthetic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004329GO-mf formate-tetrahydrofolate ligase activity EnsemblGenomesN/AIEA
GO:0004329GO-mf formate-tetrahydrofolate ligase activity JGI N/AIEA
GO:0004477GO-mf methenyltetrahydrofolate cyclohydrolase activity EnsemblGenomesN/AIEA
GO:0004488GO-mf methylenetetrahydrofolate dehydrogenase (NADP+) activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
PTHR24508Panther JGI N/AIEA
PTHR24508:SF8Panther JGI N/AIEA
PF01268PFAM Formate--tetrahydrofolate ligase JGI N/AIEA
PWY-2161SoyCyc9 folate polyglutamylation Plant Metabolic Network ISS
PWY-3841SoyCyc9 folate transformations II Plant Metabolic Network ISS
GN7V-64222SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.10g112700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g112700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g13840 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g112700
>Glyma.10g112700.1 sequence-type=CDS polypeptide=Glyma.10g112700.1.p locus=Glyma.10g112700 ID=Glyma.10g112700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGTTGTGATTGTTGCAATTGCTGCTACACTTGGAAATCTTCTGATGGGATGGGATAGTTCAACTATTGCAGACAAAATGATGTCCTCAACTACAGTGAGGAAGTTGCAGGTGGTGTCCCCTGTTCCTGTGGACATAGACATTGCAAACTCCGTTGAACCCGTTCATATCTCCCAGATTGCCAAAGACCTCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCCAAGGTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTATGTTGTGGTCGGAGGCATTACTCCGACTCCTCTCGGGGAAGGCAAATCTACTACTACAGTGGGGCTCTGTCAAGCTTTAGGTGCTTTTCTTGATAAAAAGGTAGTCACCTGCCTTCGTCAACCATCGCAAGGACCTACTTTTGGAATTAAAGGAGGTGCAGCTGGTGGTGGCTATAGCCAAGTTATTCCCATGGATGAATTCAATCTTCATCTAACAGGAGATATTCATGCAATAACTGCAGCAAACAATCTTCTAGCTGCTGCAATTGATACCCGAATTTTCCATGAGTCAACACAGTCAGATAAGGCTCTTTTTAACCGGTTGTGCCCTCCAAATAAAGAAGGGAAAAGGAGCTTTAGTGATGTCATGTTCAGGCGTCTTACGAAGCTTGGCATTTCAAAGACCAATCCAGATGATCTTACACCAGAAGAAGTAAATAAATTTGCTAGGCTTGATATTGACCCAAATTCTATCACATGGAGGAGAGTAATGGACATCAATGATCGATTCTTGAGAAAAATTGCTATTGGCCAGGGACTTGACGAGAAAGGAATGGTGAGAGAAACAGGCTTTGATATTTCAGTTGCTAGTGAGATTGTGGCTGTTTTGGCACTGACAACATCCTTAGCTGATATGCGAAAGAGGCTTGGGAAAATGGTTATTGGGAATACGCGAGAGAGCCATTTCACATTCTGTTTTATGTTAGATCTCATTACTGAAATGGCTCAAGAAACGACCCGTGCGTTACGCACGGGTTACATCCTAGTATATATATATATATATGGAAGCACCAACATATTTAAGAAAAAGACAATTCTTTTTTGTTTTAATCATTTGAAGCCCATCTTTTATTTTTGTTTACATTAA
Predicted protein sequences of Glyma.10g112700
>Glyma.10g112700.1.p sequence-type=predicted peptide transcript=Glyma.10g112700.1 locus=Glyma.10g112700 ID=Glyma.10g112700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVVIVAIAATLGNLLMGWDSSTIADKMMSSTTVRKLQVVSPVPVDIDIANSVEPVHISQIAKDLNLSPNHYDLYGKYKAKVLLSVLDELQGSEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALFNRLCPPNKEGKRSFSDVMFRRLTKLGISKTNPDDLTPEEVNKFARLDIDPNSITWRRVMDINDRFLRKIAIGQGLDEKGMVRETGFDISVASEIVAVLALTTSLADMRKRLGKMVIGNTRESHFTFCFMLDLITEMAQETTRALRTGYILVYIYIYGSTNIFKKKTILFCFNHLKPIFYFCLH*






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