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Report for Sequence Feature Glyma.10g111800

Feature Type:gene_model
Chromosome:Gm10
Start:26565230
stop:26581003
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g111800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56160.1AT Sodium Bile acid symporter family JGI N/AIEA
GO:0006814GO-bp sodium ion transport JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009941GO-cc chloroplast envelope EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008508GO-mf bile acid:sodium symporter activity JGI N/AIEA
KOG4821 KOG Predicted Na+-dependent cotransporter JGI N/AIEA
PTHR18640Panther FAMILY NOT NAMED JGI N/AIEA
PTHR18640:SF1Panther JGI N/AIEA
PF01758PFAM Sodium Bile acid symporter family JGI N/AIEA

Expression Patterns of Glyma.10g111800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g111800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g14310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g111800
>Glyma.10g111800.1 sequence-type=CDS polypeptide=Glyma.10g111800.1.p locus=Glyma.10g111800 ID=Glyma.10g111800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCACATTAGCTACCTCTTCCCAAGTACTGTTAAGACTTCAGCCACCGCACTCGATGGAGCCAATGGCCCACTCACTCACCCTAACTCCGTTTCCCGCCACCGCTTCCTCCTTCCGCCACCGTCACCTCTACGCCGTTAAAGCCCTAACTCTTCGCTCCGTCACTCGCCGTTTAAAACCCGCACTCGTTAGAGCCTGTGATCGGTCACAACAGATGGGTGGTAATGGAAGCAAAGAGACGAAGGGATTGAGTTGGGTGGAACCCATTTTGACATTTGCTAGGAGAAACATTCTACCCTTGGCTCTGGTTAGTGCAGTGACATTAGGATTAACATATCCTAGTATTGGTTGTGTTGCTGATAAATACGGTGTGTCAAAAATTGGTCCATTTGGTATTTTTGTTATCTCAGGATTGATGTTGCGTAGTGAAGAAATCGGTGCAGCAGTAGAAGCATGGCCTGTTGGACTCTTTGGGCTTGTGTCTATTTTATTTCTTACACCATACTTTTCTAGGGTAATATTGCAAATTCAGCTCCAACCCCAGGAATTTATTACAGGGCTGGCTATATTTGCCTGTATGCCAACTACATTATCAAGTGGTGTTGCACTTACCCAGCTTGCTGGGGGAAATTCTGCACTTGCTCTTGCAATGACTGTGATATCTAACATGTTAGGAATATTGATTATTCCACTATCCATCACAAAATTTGTAGCTGCTGGAGTTGGAGTGACTCTACCTACCAAGCAGTTATTTAAAAGTCTTGTTCTGACCATATTAATCCCCCTTATTTTGGGAAAGGTTCTACGTGAATCTTTTAAAGGTGTGGCTGACTTTGTTGACAAAAACCGCAAGCTTTTCACAGTGATCAGTGCACTTTTCCTTAGCCTAGTACCTTGGACACAAGTGAGTAGGTCAAGGTCATTGCTGTTAATGGTGAAGCCCAGTGTTTTTCTTGTAGCTATTGGACTGGGAACGCTTCTTCATCTGTCTTTATTGGTATTTAATATCCTTGCTGTCTGGGGTCTTTCAGTTATCTCCGGTGGTAAAAATTCAATTTTTTCCCGGGAACAAAATGCCAGTGCACTCGTACTAGTAGCAAGCCAGAAAACATTACCTGTAATGGTAGCAGTGATAGAGCCACTTCGAGGTGCATTTGGAGAATCTGGGTTACTGGTTCTTCCTTGTGTTGCAGCACATCTCAACCAGATTATTCTTGACACTTTTATCGTTAACTTCTTGCGTCCCCAAGACAATTCCAACAATGTCAAGGTGGCTTAA
Predicted protein sequences of Glyma.10g111800
>Glyma.10g111800.1.p sequence-type=predicted peptide transcript=Glyma.10g111800.1 locus=Glyma.10g111800 ID=Glyma.10g111800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFTLATSSQVLLRLQPPHSMEPMAHSLTLTPFPATASSFRHRHLYAVKALTLRSVTRRLKPALVRACDRSQQMGGNGSKETKGLSWVEPILTFARRNILPLALVSAVTLGLTYPSIGCVADKYGVSKIGPFGIFVISGLMLRSEEIGAAVEAWPVGLFGLVSILFLTPYFSRVILQIQLQPQEFITGLAIFACMPTTLSSGVALTQLAGGNSALALAMTVISNMLGILIIPLSITKFVAAGVGVTLPTKQLFKSLVLTILIPLILGKVLRESFKGVADFVDKNRKLFTVISALFLSLVPWTQVSRSRSLLLMVKPSVFLVAIGLGTLLHLSLLVFNILAVWGLSVISGGKNSIFSREQNASALVLVASQKTLPVMVAVIEPLRGAFGESGLLVLPCVAAHLNQIILDTFIVNFLRPQDNSNNVKVA*






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