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Report for Sequence Feature Glyma.10g108800

Feature Type:gene_model
Chromosome:Gm10
Start:24976100
stop:24977551
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g108800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G11820.1AT hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008299GO-bp isoprenoid biosynthetic process EnsemblGenomesN/AIEA
GO:0008299GO-bp isoprenoid biosynthetic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004421GO-mf hydroxymethylglutaryl-CoA synthase activity EnsemblGenomesN/AIEA
GO:0004421GO-mf hydroxymethylglutaryl-CoA synthase activity JGI N/AIEA
PTHR11877Panther HYDROXYMETHYLGLUTARYL-COA SYNTHASE JGI N/AIEA
PTHR11877:SF10Panther HMG COENZYME A SYNTHASE, ISOFORM A JGI N/AIEA
PF01154PFAM Hydroxymethylglutaryl-coenzyme A synthase N terminal JGI N/AIEA
PWY-5910SoyCyc9 superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Plant Metabolic Network ISS
PWY-922SoyCyc9 mevalonate pathway I Plant Metabolic Network ISS
GN7V-65369SoyCyc9-rxn hydroxymethylglutaryl-CoA synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.10g108800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g108800 not represented in the dataset
Glyma.10g108800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g108800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g15532 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g108800
>Glyma.10g108800.2 sequence-type=transcript locus=Glyma.10g108800 ID=Glyma.10g108800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGCTCTCAGCATGTCACTCGCTCATTGACCGTCGCTCAAGGCTTTCTCTCACCGGCGTGGCCCCTTTTTGTAGCCACCGTTGATGTCACTCAAGGCTCTCTGGTCAGCGTCCTGGCTCGGTCAGTTGGTCAAGTCACACAAGTTATGTAGCAGAACTTGATCTATTTTGGGATCTAAACCCTGGGCAAGCGTCACCGacaacaacaacaacaacCATGGGTTACTTTGACCTCAACATCCCCTACCCTGAACCTTCCCTTGCCAACAAGGCCACCGAGCAAGATGTTGATTCAACTAATGCATGCTATGGAGGAACAACTACTTTGTTCAAGTGTGTGAATTGGGTGAATAGTAGCTCATGGGATGGAGATTATGGACTTATTATATGTACAAACATTATGGTATGTTTGCGACAGATTTACTACTTAATGCATAAGGAAATTTCAATTCttatattttatccatttttttaa
Coding sequences of Glyma.10g108800
>Glyma.10g108800.1 sequence-type=CDS polypeptide=Glyma.10g108800.1.p locus=Glyma.10g108800 ID=Glyma.10g108800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGTATTTGTGTTTATGTGATATCTGTATCTTATATTAATAACTCATGCAACAATCAAGCAAGTGGTAATATTGATATTGAAGATGTTGATTCAACTAATGCATGCTATGGAGGAACAACTACTTTGTTCAAGTGTGTGAATTGGGTGAATAGTAGCTCATGGGATGGAGATTATGGACTTATTATATGTACAAACATTATGGTATGTTTGCGACAGATTTACTACTTAATGCATAAGGAAATTTCAATTCTTATATTTTATCCATTTTTTTAA

>Glyma.10g108800.2 sequence-type=CDS polypeptide=Glyma.10g108800.2.p locus=Glyma.10g108800 ID=Glyma.10g108800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTACTTTGACCTCAACATCCCCTACCCTGAACCTTCCCTTGCCAACAAGGCCACCGAGCAAGATGTTGATTCAACTAATGCATGCTATGGAGGAACAACTACTTTGTTCAAGTGTGTGAATTGGGTGAATAGTAGCTCATGGGATGGAGATTATGGACTTATTATATGTACAAACATTATGGTATGTTTGCGACAGATTTACTACTTAATGCATAAGGAAATTTCAATTCTTATATTTTATCCATTTTTTTAA
Predicted protein sequences of Glyma.10g108800
>Glyma.10g108800.1.p sequence-type=predicted peptide transcript=Glyma.10g108800.1 locus=Glyma.10g108800 ID=Glyma.10g108800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MCICVYVISVSYINNSCNNQASGNIDIEDVDSTNACYGGTTTLFKCVNWVNSSSWDGDYGLIICTNIMVCLRQIYYLMHKEISILIFYPFF*

>Glyma.10g108800.2.p sequence-type=predicted peptide transcript=Glyma.10g108800.2 locus=Glyma.10g108800 ID=Glyma.10g108800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGYFDLNIPYPEPSLANKATEQDVDSTNACYGGTTTLFKCVNWVNSSSWDGDYGLIICTNIMVCLRQIYYLMHKEISILIFYPFF*






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