SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g107100

Feature Type:gene_model
Chromosome:Gm10
Start:24311327
stop:24317473
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g107100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G41540.1AT 6-phosphogluconate dehydrogenase family protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0006072GO-bp glycerol-3-phosphate metabolic process EnsemblGenomesN/AIEA
GO:0046168GO-bp glycerol-3-phosphate catabolic process EnsemblGenomesN/AIEA
GO:0046168GO-bp glycerol-3-phosphate catabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0009331GO-cc glycerol-3-phosphate dehydrogenase complex EnsemblGenomesN/AIEA
GO:0004367GO-mf glycerol-3-phosphate dehydrogenase [NAD+] activity EnsemblGenomesN/AIEA
GO:0004367GO-mf glycerol-3-phosphate dehydrogenase [NAD+] activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding JGI N/AIEA
KOG2711 KOG Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase JGI N/AIEA
PTHR11728Panther GLYCEROL-3-PHOSPHATE DEHYDROGENASE JGI N/AIEA
PF01210PFAM NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JGI N/AIEA
PF07479PFAM NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JGI N/AIEA
PWY-6118SoyCyc9 glycerol-3-phosphate shuttle Plant Metabolic Network ISS
GN7V-45853SoyCyc9-rxn glycerol-3-phosphate dehydrogenase (NAD+) Plant Metabolic Network ISS

Expression Patterns of Glyma.10g107100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g107100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g15900 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g107100
>Glyma.10g107100.1 sequence-type=CDS polypeptide=Glyma.10g107100.1.p locus=Glyma.10g107100 ID=Glyma.10g107100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGTAGTTAGTAATGAGTACTCAAATGGATCTGTTCAAGGCTGCAATAGTTTAGAGGAGAAGCTCGATGATCTTCGTGGCCTACTTGGCAAGGCTGATGGTGATCCTTTGAGAATTGTGAGTGTTGGTGCTGGTGCTTGGGGCAGTGTTTTTGCTGCTTTGCTGCAAGATACTTATGGCCAATTCCGTGATAAGGTGCAAATCAGGATATGGAGAAGGCCAGGAAAGACAGTTGATAGAGCCACTGCAGAGCACCTCTTCGAAGTTATCAATTCTAGGGAGGATGTGTTGAGGAGGTTGATAAGGCGCTGTGCTTATCTGAAATACGTCGAAGCCAGGCTTGGTGATAGGACTCTTCTGGCTGATGAGATTTTGAAAGATGGGTTTTGCTTGAATATGATTGACACACCACTTTGTCCATTGAAGGTGGTCACAAACTTGCAAGAAGCTGTTTGGGATGCTGATATTGTGGTTAATGGTTTGCCTTCAACCGAAACACGCGAGATTTTTGAAGAGATTAGTATATATTGGAAGGAGAGAATCACAGTGCCAGTGATAATCTCTTTGGCAAAGGGTATAGAGGCTGCATTGGAGCCTGTTCCCCATATTATAACCCCCACAAAAATGATTAACCAAGCAACTGGAGTGCCTATGGAGAACATACTTTATCTTGGTGGTCCAAATATTGCCTCAGAAATATACAACAAGGAGTATGCCAATGCTCGAATATGCGGAGCAGAGAAATGGAGGAAACCTCTGGCAAAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGATCATGGGTGGCCTGAAAAATGTCTATGCAATTGGTGCCGGAATGGTAGCAGCCCTTACCAATGAGAGTGCTACTAGCAAATCTGTCTACTTTGCACACTGCACATCAGAGATGATATTTATCACTCATTTGTTGGCTGAAGAGCCTGAGAAACTTGCAGGGCCACTATTGGCTGACACTTATGTGACTTTACTAAAAGGTCGTAACGCATGGTATGGTCAGATGTTAGCTAAGGGTGAATTAAGCCCAGACATGGGTGACAGCATCAGTGGCAAAGGAATGATTCAGGGTGTCTCTGCAGTGGAGGCATTCTTTGAACTTTTGAGCCATTCAAGCCTGAATGTGTTGCACCCAGAAGAAAACAAACCGGTTGCTCCTGTTGAACTCTGCCCCATCCTGAAGACACTGTATAAAATATTGATATCCAGGGAACAGTCATCAGAAGCTATTCTCCAAGCTCTTAGGGATGAAAATCTGAATGATCCCCGTGAACGCATTGAGATTGCACAAAGCCATGCTTTCTACATGCCTTCACTTCTTGGACAACCTTGA
Predicted protein sequences of Glyma.10g107100
>Glyma.10g107100.1.p sequence-type=predicted peptide transcript=Glyma.10g107100.1 locus=Glyma.10g107100 ID=Glyma.10g107100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVVSNEYSNGSVQGCNSLEEKLDDLRGLLGKADGDPLRIVSVGAGAWGSVFAALLQDTYGQFRDKVQIRIWRRPGKTVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLLADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREIFEEISIYWKERITVPVIISLAKGIEAALEPVPHIITPTKMINQATGVPMENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEIMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSISGKGMIQGVSAVEAFFELLSHSSLNVLHPEENKPVAPVELCPILKTLYKILISREQSSEAILQALRDENLNDPRERIEIAQSHAFYMPSLLGQP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo