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Report for Sequence Feature Glyma.10g106500

Feature Type:gene_model
Chromosome:Gm10
Start:24134465
stop:24150105
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g106500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57300.1AT INO80 ortholog JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006338GO-bp chromatin remodeling EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0031011GO-cc Ino80 complex EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0004386GO-mf helicase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016817GO-mf hydrolase activity, acting on acid anhydrides JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
KOG0388 KOG SNF2 family DNA-dependent ATPase JGI N/AIEA
PTHR10799Panther SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED JGI N/AIEA
PTHR10799:SF213Panther DNA HELICASE INO80 JGI N/AIEA
PF00176PFAM SNF2 family N-terminal domain JGI N/AIEA
PF00271PFAM Helicase conserved C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.10g106500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g106500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g15990 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g106500
>Glyma.10g106500.1 sequence-type=CDS polypeptide=Glyma.10g106500.1.p locus=Glyma.10g106500 ID=Glyma.10g106500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCGCAAATCCAAACGCAACCACTCGTTCTCCTACTCCACTCTCTTCAACCTCGAGCCTTTGAAGAACTTTAAACTTCCACGTGAAGATGATGATGATTTTGATTATTATGGGAATAATAGTCAGGAAGATGAGAGCAGAGATAGCCAAGGTGAAAGGGAAAATTACTGTAATGGAAATGTGCACGCAAGGGAGCAGAATTCGTCGAGTAAGAGGGTGTGGTCTGAGAACAGTGATACTGATGATGAGAATAAGGGAAGATATTATGGGACACACATGACACAGGAACGATATCAATCAATGCTTGGAGACCATGTTCAGAAATACAAAAGGAGGCGTAAGGATGCCATGTCTAACACTGATCAAAATCAGGTTGTTGTTCCTCTTGTCAAAAGTAACAATGGCTTAAAAATTCAAAAGTCAGGGAATGATTGTAGGGGAGCATCACATGCTGAAGAAAGGGCATCGGAATGGCTTCAGGATCAGAAACAAGGAAACTTCAGTCGTGCAGATTTCAAGCAGCAATATGGCACTGATAGGATTATGTATGAACCTGCTGTTTTGGACATTGGGAATGGTATCTCTTATGAGATTCCTCCAATTTACGATAAGTTGGCCCCGATGCTGAACCTTCCAAACTTCCTGGATATCCATGTCGATGAATTTTACTTAAAGAGTACCTTGGATTTGGGGTCCTTGGCTGCAATGAGGGCTGCTGATAAAAGGTTTGGGACTAGAAACCAAGCAGGAATGGGGGAACCCCTATCCCAATATGAATCACTTCAGGCAAGAATAAAGGCCATGCCAGCTTCTAATTCACCTCATAAATTCAGCTTGAAAGTGTCTGATGTTGGATTGAATTTATCCATTCCGGAGGGTGCTGCTGGAACCATAAAGCGATCTATTTTATCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAGGGTGACACATATGAGATAATTGAGCGAAGCCTACCGAAGAAGCAAAAGGTAAGGAAAGATTCTGCTTTGATAGAGAAGGAAGAAATGGATAGAATTGGGAAGATTTGGATAAACATTGTAAGAAGAGACATAGCAAAGCATCATAGGAATTTCACTAATTTTCATCGAAAGCAACTCATTGATGCCAAGAGGTTCTCAGACTACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCACTCAAATGGATTAAGGGTGCTAACATTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGCTCTGGAAACGAGTAGATAAAGAGATGGCCGAAGTCAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAAGAGCTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCAAGTGTACACTCTTCAGATGCTTTACCCTCGGTAGATGAAAACACAAATGATCAAGATGTACTGTTTGACTCTTCAGACGCTGGGCATAATGAGGAGGAAGATCCGGAAGAGGCTGAATTAAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAACAGAGAATGTTGACTAATGCTTTTGACAGTGCATGCTTGAGGTTCCGCCAGGTGGATGAAGCCGATTCACTTACACGGCAATTAGCAGGAGGAAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGTATCCACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAGGCTATGGCATTTTTAGCCCATTTGGCTGAGGAGAAAAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAATAATTGGAATGAGGAACTTGAACGCTTCTGCCCTGAGATTAAAAGACTTCCATATTGGGGAGGACTTTCAGAGCGAGCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAGGCTAAATTCCACATTCTTATCACAAGCTATCAGCTATTAGTAACTGATGAGAAGTATTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAAACAGTATAAGGTGGAAGACACTTCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTGTTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTTATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCGAAAGGAATTGAGAACCATGCAGAACATGGGGGTACGTTGAATGAGCACCAGCTTAATAGATTGCATTCAATACTAAAACCTTTCATGCTGCGACGTGTTAAAAAGGATGTAATTTCTGAGCTGACTAATAAAACTGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCTATTAAGAACAAGATATCTCTTGCTGGGTTGTTTGATAGTAATCGTGGGCAGCTCAATGACAAGAAAGTTATGAGTTTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAACGAAGGGAGCACGTACTTTTACTTTGGAGAAATTCCAAATTCCCTTCCACCTCCTCCATTCGGGGAGTTAGAGAATATATACTATCCTGGTGGGCATAACCCGATATCATATGAGATACCAAAACTTGTCTATAAAGAGATTATACAAAGTTCGGCTGTTGGTCATGGTATCTGCAGGGAATCTTTTCAGAAATATTTTAATATTTTTAGACCTGAAAATGTTCATCGATCTATCTTCTCAGAAGATATTATTGTTAAAAGTGGAAACTTTGGTTTTACCCATCTGATGGATTTGTCTCCCCAAGAGGTGGCATTTATGGCCACTGGTTCTTTTATGGAGCGACTGTTATTTTCAATGATGAGATGGGAACGGAAGTTCCTTGATGAAGTTTTAGACTTTCTTATAGAGACCACAATCGGTGATCCTGAATGTTACCTTGAGAAAGGTAAAGTGAGAGCTGTTTCACGAATGTTATTGTTGCCATCAAGATATGAGACCAAGTTTCTTCAGAAAAAGTTTGCAACTGGACCCACCAATGCTCCTTTTGAGGCCTTGATGGTCTCACATCAGGATAGGCTTTCATCAAATGCAAGGCTTCTTCACTCAGCATACACATATATCCCACCAACTAGAGCTCCCCCAATTTGTGCTCACTGCTCAGACAGAAACTTCTCCTATAAAATGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCGCGTACATCTGAATGTAATGGGCCTAGAAAGCCTGATAATCCTTCTCATTTAATTGAAGAGATCGATTCTGAATTACCCATTTCACAGCCTGCACTTCAGTTCACGTATGGTATTTTTGGCTCTTCACCGCCTGTGCGGAATTTTGATCCAGCAAAGTTGCTCACTGACTCTAAGAAGCTTCAAACACTGGATATATTATTGAAGCGCTTACGAGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGATATTTTAGACTTGATGGGTCATCCACTATTCAGGATCGCAGAGACATGGTTAGAGACTTCCAGCACAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCGATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCATAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTTGATGATGTTCAATTGCAACAGAAGTTAAAGGAAATTCCTCTCCAGGTAAAGAGTAAGCAAAAGAAAAAACCTAACAAGGCTATACGGATAAATGAGGAAGGTGATGCATCTTTGGAGGATCTAACAAACTGTCTAGACCAGGGAACTGCAAATCATGATACTTCCATGGATCCGGAGGGACCAAAGTCCAGTAATAAAAAGACAAAAACAGCTTCTGACAAGCAAAAACCGAGCCCAAAGTGTTCTCAGAAGAAGATGAAAGGCAGTATGTCTAATAGATAA
Predicted protein sequences of Glyma.10g106500
>Glyma.10g106500.1.p sequence-type=predicted peptide transcript=Glyma.10g106500.1 locus=Glyma.10g106500 ID=Glyma.10g106500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDRKSKRNHSFSYSTLFNLEPLKNFKLPREDDDDFDYYGNNSQEDESRDSQGERENYCNGNVHAREQNSSSKRVWSENSDTDDENKGRYYGTHMTQERYQSMLGDHVQKYKRRRKDAMSNTDQNQVVVPLVKSNNGLKIQKSGNDCRGASHAEERASEWLQDQKQGNFSRADFKQQYGTDRIMYEPAVLDIGNGISYEIPPIYDKLAPMLNLPNFLDIHVDEFYLKSTLDLGSLAAMRAADKRFGTRNQAGMGEPLSQYESLQARIKAMPASNSPHKFSLKVSDVGLNLSIPEGAAGTIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVRKDSALIEKEEMDRIGKIWINIVRRDIAKHHRNFTNFHRKQLIDAKRFSDYCQREVKMKVSRSLKWIKGANIRTRKLARDMLLLWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSVHSSDALPSVDENTNDQDVLFDSSDAGHNEEEDPEEAELKKEALKAAQEAVSKQRMLTNAFDSACLRFRQVDEADSLTRQLAGGSNIDLQTPSTMPVVSTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEIKRLPYWGGLSERAVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTNKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDSNRGQLNDKKVMSLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGELENIYYPGGHNPISYEIPKLVYKEIIQSSAVGHGICRESFQKYFNIFRPENVHRSIFSEDIIVKSGNFGFTHLMDLSPQEVAFMATGSFMERLLFSMMRWERKFLDEVLDFLIETTIGDPECYLEKGKVRAVSRMLLLPSRYETKFLQKKFATGPTNAPFEALMVSHQDRLSSNARLLHSAYTYIPPTRAPPICAHCSDRNFSYKMIEELHDPWVKRLFVGFARTSECNGPRKPDNPSHLIEEIDSELPISQPALQFTYGIFGSSPPVRNFDPAKLLTDSKKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQVKSKQKKKPNKAIRINEEGDASLEDLTNCLDQGTANHDTSMDPEGPKSSNKKTKTASDKQKPSPKCSQKKMKGSMSNR*






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