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Report for Sequence Feature Glyma.10g106400

Feature Type:gene_model
Chromosome:Gm10
Start:23998154
stop:24003019
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g106400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10300.3AT Calcium-binding EF-hand family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004198GO-mf calcium-dependent cysteine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding JGI N/AIEA
KOG0037 KOG Ca2+-binding protein, EF-Hand protein superfamily JGI N/AIEA
PTHR10183Panther CALPAIN JGI N/AIEA
PTHR10183:SF16Panther JGI N/AIEA
PF00036PFAM EF hand JGI N/AIEA

Expression Patterns of Glyma.10g106400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g106400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g16040 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g106400
>Glyma.10g106400.1 sequence-type=CDS polypeptide=Glyma.10g106400.1.p locus=Glyma.10g106400 ID=Glyma.10g106400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCGGCTATCCCAACCAGCCTCCCAGCTACAGCTACGGCGCGCCGCCGCCGCCCCAACCCTACGGTGCCCATCCGCCATCGCAATCATACGGGGCTCCTCCGCCATCGCAATCATACGGGGCTCCTCCGCCACCGCAACCCTACGGCGCGCCGCCGCCCGCTCAGCCCTACTCCGCCTCCCCCTACGCCCAACCGTCCGCCCCCTACGCCGCCCCCTACAACAAACCCCCGAAGAACGAGTCCCACTCCCACGGCGGAGGAAGCAGCGGCGGCTACCCGGCTCCGGCGTACGCGAGCCCGTTCGCGTCGCTGGTGCCATCGGCGTTCCCTCCAGGGACAGACCCTAACGTGGTGGCGTGCTTCCAGATGGCGGACCAGGACGGAAGCGGATTTATCGACGACAAGGAAATGCAGGGAGCGCTTTCTTCCTATAACCAAAGCTTCAGCCTCAGAACCGTTCATCTTCTCATGTATCACTTCACCAATTCCAACGTCAAGAAAATAGGACCAAAGGAATTCACTTCTCTATTTTACAGTCTTCAGAACTGGAGGTCCATTTTTGAGAGATTTGATAAAGACAGAAGCGGCAAAATCGATTCTACTGAGTTGAGAGATGCTCTACTGAGTCTGGGCTATGCTGTTTCTCCTGTGGTATTGGATTTGCTCGTCTCAAAGTTTGACAAAACTGGTGGAAAAAGCAAGGCTATAGAATATGACAATTTCATCGAGTGTTGTCTTACTGTTAAGGGACTGACTGACAAATTCAAAGAAAAGGATACTGCGTATTCTGGCTCTGCAACCTTCACCTATGAATCGTTTATGCTGACAGTCCTGCCATTCCTAATAGCTTAG
Predicted protein sequences of Glyma.10g106400
>Glyma.10g106400.1.p sequence-type=predicted peptide transcript=Glyma.10g106400.1 locus=Glyma.10g106400 ID=Glyma.10g106400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGYPNQPPSYSYGAPPPPQPYGAHPPSQSYGAPPPSQSYGAPPPPQPYGAPPPAQPYSASPYAQPSAPYAAPYNKPPKNESHSHGGGSSGGYPAPAYASPFASLVPSAFPPGTDPNVVACFQMADQDGSGFIDDKEMQGALSSYNQSFSLRTVHLLMYHFTNSNVKKIGPKEFTSLFYSLQNWRSIFERFDKDRSGKIDSTELRDALLSLGYAVSPVVLDLLVSKFDKTGGKSKAIEYDNFIECCLTVKGLTDKFKEKDTAYSGSATFTYESFMLTVLPFLIA*






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