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Report for Sequence Feature Glyma.10g106200

Feature Type:gene_model
Chromosome:Gm10
Start:23960046
stop:23961490
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g106200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G13850.1AT glycine-rich RNA-binding protein 2 JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0022625GO-cc cytosolic large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
PTHR10052Panther 60S RIBOSOMAL PROTEIN L18A JGI N/AIEA
PTHR10052:SF1Panther 60S RIBOSOMAL PROTEIN L18A JGI N/AIEA
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA
PF01775PFAM Ribosomal L18ae/LX protein domain JGI N/AIEA

Expression Patterns of Glyma.10g106200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g106200 not represented in the dataset
Glyma.10g106200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g106200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g16073 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g106200
>Glyma.10g106200.1 sequence-type=CDS polypeptide=Glyma.10g106200.1.p locus=Glyma.10g106200 ID=Glyma.10g106200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACCAGATCAGCACCCTAAGATCTACCGAATGAAGCTCTGGTCCATCAATAAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTTCTGAGGAAATTGAAAAAGGTGAAGAAGAGCAATGACCAAGTGTTTATTATCAACAAGGATTTTTGTAATAAGGTTGGAAATGTCTTGAGGCAAAGTGTTGCTTTCAGCACAAAAGCACTTGTTTCATCCATGCTTAATTACATTCGCTGCATGTTTTCAAGCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGATCAGTCTCTTAAGGATGTATTTTCTGACTTTGGAGATATGGTTGATAGTAAATTTGGCTCACTTTCATTGCTGTTACATGGTTTGTTGATGAGATCTTCCATGATTTAA
Predicted protein sequences of Glyma.10g106200
>Glyma.10g106200.1.p sequence-type=predicted peptide transcript=Glyma.10g106200.1 locus=Glyma.10g106200 ID=Glyma.10g106200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPDQHPKIYRMKLWSINKVRAKSKFWYFLRKLKKVKKSNDQVFIINKDFCNKVGNVLRQSVAFSTKALVSSMLNYIRCMFSSKLFIGGLSYGVDDQSLKDVFSDFGDMVDSKFGSLSLLLHGLLMRSSMI*






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