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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04040.1 | AT | Patatin-like phospholipase family protein | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016042 | GO-bp | lipid catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0004806 | GO-mf | triglyceride lipase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG2214 | KOG | Predicted esterase of the alpha-beta hydrolase superfamily | JGI | N/A | IEA |
| PTHR11711 | Panther | ADP RIBOSYLATION FACTOR-RELATED | JGI | N/A | IEA |
| PTHR11711:SF1 | Panther | JGI | N/A | IEA | |
| PF01734 | PFAM | Patatin-like phospholipase | JGI | N/A | IEA |
| PF11815 | PFAM | Domain of unknown function (DUF3336) | JGI | N/A | IEA |
| LIPAS-PWY | SoyCyc9 | triacylglycerol degradation | Plant Metabolic Network | ISS | |
| GN7V-50942 | SoyCyc9-rxn | triacylglycerol lipase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| SDP1 | triacylglycerol lipase SDP1 |
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Glyma.10g105200 not represented in the dataset |
Glyma.10g105200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g16530 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g105200.1 sequence-type=CDS polypeptide=Glyma.10g105200.1.p locus=Glyma.10g105200 ID=Glyma.10g105200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATCATATAAATAACGAGGCTAGTGTTGACCCTTTTGCGATTGGCCCTTCTAGCATTCTTGGTAGAACAATTGCTTTCAGGGTTCTCTTCTGCAAGTCTATCTCACAATTGAGGCATCATATACATTTTGTGTTGTTGGATATCTTGAAAAGATTTTGGGGATTTTGGGGACCCATTGTGTCATGGTTGCATCCAAGAAACCCGCAGGGGATATTGGCAATGATGACAATAATTGCTGTCTTGTTGAAACGTTACAGCAGTGTGAAGGTGAGGGCCGAGATAGCATATAGGCAGAATTTTTGGAGAAATATGATGCGAGCTGCATTGACCTATGAGGAGTGGGCTCATGCAGCCAAGATGATTGATAGAGAGACACCAAAGATGAATGAATCAAAAGACCTTTATGATGTGGAGTTGGTGAGTAACAAGCTTCAAGAGCTTCGCCATCGCAGGCAAGAGGGGTCTCTTAGAGATATAATATTTTGTATGCGTGCAGATCTTGTTAGGAATCTAGGTAATATGTGTAATCCAGAGCTACACAAAGGTAGGCTTCAGATGCCAAGACTAATCAAGGAGTATATTGATGAGGTATCAACTCAATTGAGAATGGTTTGCAACTCTGATTCAGAGGAGCTTGCATTGGAAGAAAAGCTTTCTTTCATGCATGAAACTAGACACGCATTTGGGAGGACTGCTTTGTTGTTAAGTGGAGGTGCTTCCCTTGGAGCTTTTCATGTTGGTGTGGTTAAAACACTGGTTGAACATAAACTTTTGCCTAGGATAATTGCTGGTTCAAGTGTAGGATCCATTATGTGTTCTATTGTTGCCACTAGGTCTTGGCCTGAGCTCCAAAGCTTTTTTGAGGATTCATTGCACTCATTACAGTTTTTTGATCAAATGGGTGGGATTTTTACAGTTGTGAAGAGGGTAACAACATATGGTGCAGTTCATGAGATCAGACAGTTGCAAATGTTGTTGAGGAATCTAACAAGCAATCTTACATTTCAAGAAGCATATGACATGACGGGTCGAATTCTCGGAATTACAGTTTGCTCCCCGAGAAAGCATGAACCACCCAGATGTCTTAACTACTTGACTTCACCTCATGTTGTTATATGGAGCGCAGTCACTGCTTCTTGTGCCTTTCCTGGCCTTTTCGAGGCTCAGGAATTGATGGCAAAGGATAGAAGTGGAGAGATTGTTCCTTACCATCCACCATTTAATTTGGGTCCTGAAAAGGGTTCCACTTCAGTGCGCCGTTGGAGGGATGGTAGCTTGGAGATGGATTTGCCTATGATGCAATTGAAAGAGCTCTTCAATGTCAATCATTTTATAGTTAGTCAGGCCAATCCTCACATTGCCCCATTATTGAGATTCAAAGAAATTATCCGAGCTTATGGAGGTAATTTTGCAGCAAAGCTTGCTCATCTAGCAGAGATGGAGGTGAAACATAGATGTAATCAAGTACTGGAACTCGGCTTTCCATTAGGTGGACTAGCCAAACTGTTTGCTCAAGACTGGGAGGGTGATGTAACAGTTGTTATGCCTGCAACTCCTGCCCAATACTTAAAAATCATACAGAACCCTTCTTATGTAGAGCTTCAAAAGGCAGCTAACCAAGGCAGAAGATGCACCTGGGAGAAGCTTTCGGCCATGAAAGCAAATTGTGGAATTGAGCTTGCTCTTGATGAGTCTGTTGCAATTCTCAATCATATGAGACGACTCAAAAGAAATGCTGAGAGAACTGCTGCTGCTTCTCATGGTCTTCCCAGTACAGGCAAATTTAGTGGTTCAAGAAGAATTCCATCGTGGAACATCATTGCACGAGAGAATTCTACAGGCTCCCTAGAAGACCTTCATGCTGCTGCTGCTGCTACTTCCTCATTGCATCAAGGTGTTATTAGTCCCAGTGGAGCCACTGGTAAAAATTGGAAGTCCCACCGTAGCTTTCATGATGCAAGTGACAGTGAATCTGAAAGTGCTCATGACTTGAATTCTTGGACCAGATCTGGTGGGCCTTTGATGAGAACTACATCAGCAGATATGTTCATTGACTTTTTCCAGAACATAGAAGTTGATACCGAACTAAATAGAGGCAAGGTGACAAACACTACCACTAGCCCTCGTGATTTTCAGCATCACATTTCAAGGCACACAACACCTGATCATAATAGGTGGTGCTCTAAGAGAACAGAAATCGATCAGAAAGAAAATGGCAACAGGATGATTGCCATGAATGGATCTAACATAATGGTAACTGAAGGTGATCTTTTACAGCCTGAAAGGATCCATAATGGGATTGTGTTTAATGTTGTCAAGAAACAAGACTTTTTGACCCCTTCAAATAGGAATAATGATTATAATAGTTGTTGTAACAATGAAGTTGCTGAATGTGTACAAATTGAATTTCCAGGGAAGGAGGTGGATGCTCTTAGTTCAGCTTCCGAAAATGGCGATGATGGTTCCACAATGGCCAGGTCCCTAACTGAAAAACCAGATTATAATTCAACAAATCATTTCAGCAAAGATTTTGGTGAAGATCAAAGCATTGCTGACAATTAA
>Glyma.10g105200.1.p sequence-type=predicted peptide transcript=Glyma.10g105200.1 locus=Glyma.10g105200 ID=Glyma.10g105200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDHINNEASVDPFAIGPSSILGRTIAFRVLFCKSISQLRHHIHFVLLDILKRFWGFWGPIVSWLHPRNPQGILAMMTIIAVLLKRYSSVKVRAEIAYRQNFWRNMMRAALTYEEWAHAAKMIDRETPKMNESKDLYDVELVSNKLQELRHRRQEGSLRDIIFCMRADLVRNLGNMCNPELHKGRLQMPRLIKEYIDEVSTQLRMVCNSDSEELALEEKLSFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVEHKLLPRIIAGSSVGSIMCSIVATRSWPELQSFFEDSLHSLQFFDQMGGIFTVVKRVTTYGAVHEIRQLQMLLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFNLGPEKGSTSVRRWRDGSLEMDLPMMQLKELFNVNHFIVSQANPHIAPLLRFKEIIRAYGGNFAAKLAHLAEMEVKHRCNQVLELGFPLGGLAKLFAQDWEGDVTVVMPATPAQYLKIIQNPSYVELQKAANQGRRCTWEKLSAMKANCGIELALDESVAILNHMRRLKRNAERTAAASHGLPSTGKFSGSRRIPSWNIIARENSTGSLEDLHAAAAATSSLHQGVISPSGATGKNWKSHRSFHDASDSESESAHDLNSWTRSGGPLMRTTSADMFIDFFQNIEVDTELNRGKVTNTTTSPRDFQHHISRHTTPDHNRWCSKRTEIDQKENGNRMIAMNGSNIMVTEGDLLQPERIHNGIVFNVVKKQDFLTPSNRNNDYNSCCNNEVAECVQIEFPGKEVDALSSASENGDDGSTMARSLTEKPDYNSTNHFSKDFGEDQSIADN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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