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Report for Sequence Feature Glyma.10g105100

Feature Type:gene_model
Chromosome:Gm10
Start:23190028
stop:23190791
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g105100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06120.1AT ARM repeat superfamily protein JGI N/AIEA
GO:0006611GO-bp protein export from nucleus EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005643GO-cc nuclear pore EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005049GO-mf nuclear export signal receptor activity EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0008536GO-mf Ran GTPase binding EnsemblGenomesN/AIEA
GO:0008536GO-mf Ran GTPase binding JGI N/AIEA
PTHR12596Panther EXPORTIN 4,7-RELATED JGI N/AIEA
PTHR12596:SF2Panther RAN-BINDING PROTEIN 16 JGI N/AIEA
PF03810PFAM Importin-beta N-terminal domain JGI N/AIEA

Expression Patterns of Glyma.10g105100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g105100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g16640 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g105100
>Glyma.10g105100.1 sequence-type=CDS polypeptide=Glyma.10g105100.1.p locus=Glyma.10g105100 ID=Glyma.10g105100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGACTTTAGCACAACTGGAAGCAATGTGCGAAAGGCTTTATAACTCGCAGGACTCTGTTGAGAGAGCACATGTGGAAAGCACCCTGAAATGCTTTTCCTTAAACACTGACTACATTTCACAGTGCCAATATGTTCTGGATAATGCATCCTCCCCATATGCATTGATGTTGGCAAGTTCGAGCTTATTGAAGCAAGTGACAGAGCAAAGCCTTCCTTTACAGCTCCGGATTGATATTCGGAACTATCTCATAAACTATCTGGCCAGCAAAGGACCAGAACTGGAGCCCTTTGTGCTTGGATCCTTGATCCAACTCTTTTGTCGCATTACAAAGTTTGGTTGGCTTGATGATGACAAATTCACGGAGGTTGTTAATGAGGCAATGAACTTCTTGAGTCAGGTGACATGTTATGTTTTTATAATGTAG
Predicted protein sequences of Glyma.10g105100
>Glyma.10g105100.1.p sequence-type=predicted peptide transcript=Glyma.10g105100.1 locus=Glyma.10g105100 ID=Glyma.10g105100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
METLAQLEAMCERLYNSQDSVERAHVESTLKCFSLNTDYISQCQYVLDNASSPYALMLASSSLLKQVTEQSLPLQLRIDIRNYLINYLASKGPELEPFVLGSLIQLFCRITKFGWLDDDKFTEVVNEAMNFLSQVTCYVFIM*






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