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Report for Sequence Feature Glyma.10g102900

Feature Type:gene_model
Chromosome:Gm10
Start:21511086
stop:21519317
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g102900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26300.1AT Arginyl-tRNA synthetase, class Ic JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0006420GO-bp arginyl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0006420GO-bp arginyl-tRNA aminoacylation JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004814GO-mf arginine-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004814GO-mf arginine-tRNA ligase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
KOG4426 KOG Arginyl-tRNA synthetase JGI N/AIEA
PTHR11956Panther ARGINYL-TRNA SYNTHETASE JGI N/AIEA
PF00750PFAM tRNA synthetases class I (R) JGI N/AIEA
PF05746PFAM DALR anticodon binding domain JGI N/AIEA

Expression Patterns of Glyma.10g102900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g102900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g17590 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g102900
>Glyma.10g102900.2 sequence-type=transcript locus=Glyma.10g102900 ID=Glyma.10g102900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGCTTACGAAGAATGCTAATCGATGGTATCAACTCGTGGGCGCCTCGACTTCCAGTCAAGAGGGCTTTGATTGATTTTTCCTCTCCTAATATAGCAAAGGAAATGCATGTTGGCCACCTGAGATCTACCATTATTGGTGATACATTAGCTCGCATGCTTGAATTTTCACATGTAGAATGTGTAATCCGTAGAAATCATGTTGGTGACTGGGGAACACAGTTTGGGATGCTGATTACATACCTCTTTGAAAAATTTCCAAACCCAGACAATGTTAGTGAAGCAGACATTGGAGATCTTCAGGGAGAGAGCTTCTATAATCCATATATTCCTGGGGTTTTGGAGAAGCTGGATAATTTAGGACTGATTGAAGAGAGTGATGGTGCGCGTGTGATTTATGTTGAGGGTGTAGACATACCACTTATTGCTGTGAAAAGAGATGGTGGCTACAACTATTTTACAACTGATCTAGCATCACTTTGGTATCGTCTAAATGAAGAAAAACTTGAATGGATTGTATATGTTACAGATATTGGGCAGCAACAGCACTTTGATATGCTATTTAAGGCCTATAGGCGTGCAGGTTGGTTACCAAAGGATGAGAATGCGTATCCAAAATGTACTCATATAGGTTTTGGTCTTGTTCTTGGGGAAGATGGAAAACGATTTCGGACTCGCAGCAGTGAGGTTGTTCGATTAGTTGATTTACTTGATGAAGCTAAAAGGCGCTGTAAAATTGCCATTCTTGAACGTGATACAACTAAAGATTGGTCTGAGGAGGAGATCGAGAAAACATCCGAGGCAGTTGGTTATGGGGCTGTTAAGTATGCTGATTTGAAGATCAACAGATTAACAAATTACACCTTCAACTTTGATCAGATGCTTAATGACAAGGGGAATACTGCTGTTTATTTGCTGTATGCACATGCTAGGATCTGTTCCATTATCAGGAAATCTGGTAAAGACATAGAAGAAGTAAAGAGAAATGGGAAAATAGTGTTGGATCATGAAGATGAACGTGCATTGGGGCTTCATTTGCTACAATTTCCTGAGGTTTTTGAGGAGGCATGCACCAATTTGTTGCCCAATTTCTTGTGTGAATACCTTTACAATTTGGCAGAAATCTTTACAAAAAAATTTTACGCTAATTGTCAGGTTGTGGGGTCGCCTGAGGAAACCAGTAGACTCTTGCTATGTGAAGCAACGGTGACTGTGATGAGACACTGCTTTTATCTCCTTGGAATTGAACATGTATACAGGCTATGACCTATATATAAGAGATTCATATGCAAATTCTTCATCAGATTTTTTTGGGATATACAAGTATAGGAAACTTCACAATGAAAATTGTTCAGGCAAATTCGACCACTCCTTCCCCTCTTCCATTTTGTTAATTTTATTTGAGTTGTAACTTGTAAGAAGTAAAGTAAATAATTTATAGCAATATTGTTGACAAGGTCCCATGAAAAATTTATTTAGATGAGTTATATTTCGTTTAACTTGTGTTCCAAGAGAAATAACAAGAAAATGGACGTTATGGAGTCCACTGTACATTTGTACTAAAGAAAAATGCAACTGTATCAGTTCTTGTGCACTTAGAGTTCACAAACAGGAAAAATGAACAAAACAAAGAATAGTAAATTGATCTTATTGATTCAGAAAA
Coding sequences of Glyma.10g102900
>Glyma.10g102900.1 sequence-type=CDS polypeptide=Glyma.10g102900.1.p locus=Glyma.10g102900 ID=Glyma.10g102900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTAATCGATGGTATCAACTCGTGGGCGCCTCGACTTCCAGTCAAGAGGGCTTTGATTGATTTTTCCTCTCCTAATATAGCAAAGGAAATGCATGTTGGCCACCTGAGATCTACCATTATTGGTGATACATTAGCTCGCATGCTTGAATTTTCACATGTAGAATGTGTAATCCGTAGAAATCATGTTGGTGACTGGGGAACACAGTTTGGGATGCTGATTACATACCTCTTTGAAAAATTTCCAAACCCAGACAATGTTAGTGAAGCAGACATTGGAGATCTTCAGGCATTCTATAAGGCTTCAAAACTGAGGTTTGATAGTGATCCTGAGTTTAAGTTGAGGGCACAACAGGCAGTGGTCAGTCTCCAGAGTGGAGAAATCAAGTATCACAAGGCATGGCAACAAATTTGTGAAGTTAGTAGGGCTGAATTTGATAAAGTCTATCAATGTCTTGGAATTCAATTGGAGGAAAGGGGAGAGAGCTTCTATAATCCATATATTCCTGGGGTTTTGGAGAAGCTGGATAATTTAGGACTGATTGAAGAGAGTGATGGTGCGCGTGTGATTTATGTTGAGGGTGTAGACATACCACTTATTGCTGTGAAAAGAGATGGTGGCTACAACTATTTTACAACTGATCTAGCATCACTTTGGTATCGTCTAAATGAAGAAAAACTTGAATGGATTGTATATGTTACAGATATTGGGCAGCAACAGCACTTTGATATGCTATTTAAGGCCTATAGGCGTGCAGGTTGGTTACCAAAGGATGAGAATGCGTATCCAAAATGTACTCATATAGGTTTTGGTCTTGTTCTTGGGGAAGATGGAAAACGATTTCGGACTCGCAGCAGTGAGGTTGTTCGATTAGTTGATTTACTTGATGAAGCTAAAAGGCGCTGTAAAATTGCCATTCTTGAACGTGATACAACTAAAGATTGGTCTGAGGAGGAGATCGAGAAAACATCCGAGGCAGTTGGTTATGGGGCTGTTAAGTATGCTGATTTGAAGATCAACAGATTAACAAATTACACCTTCAACTTTGATCAGATGCTTAATGACAAGGGGAATACTGCTGTTTATTTGCTGTATGCACATGCTAGGATCTGTTCCATTATCAGGAAATCTGGTAAAGACATAGAAGAAGTAAAGAGAAATGGGAAAATAGTGTTGGATCATGAAGATGAACGTGCATTGGGGCTTCATTTGCTACAATTTCCTGAGGTTTTTGAGGAGGCATGCACCAATTTGTTGCCCAATTTCTTGTGTGAATACCTTTACAATTTGGCAGAAATCTTTACAAAAAAATTTTACGCTAATTGTCAGGTTGTGGGGTCGCCTGAGGAAACCAGTAGACTCTTGCTATGTGAAGCAACGGTGACTGTGATGAGACACTGCTTTTATCTCCTTGGAATTGAACATGTATACAGGCTATGA

>Glyma.10g102900.2 sequence-type=CDS polypeptide=Glyma.10g102900.2.p locus=Glyma.10g102900 ID=Glyma.10g102900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTAATCGATGGTATCAACTCGTGGGCGCCTCGACTTCCAGTCAAGAGGGCTTTGATTGATTTTTCCTCTCCTAATATAGCAAAGGAAATGCATGTTGGCCACCTGAGATCTACCATTATTGGTGATACATTAGCTCGCATGCTTGAATTTTCACATGTAGAATGTGTAATCCGTAGAAATCATGTTGGTGACTGGGGAACACAGTTTGGGATGCTGATTACATACCTCTTTGAAAAATTTCCAAACCCAGACAATGTTAGTGAAGCAGACATTGGAGATCTTCAGGGAGAGAGCTTCTATAATCCATATATTCCTGGGGTTTTGGAGAAGCTGGATAATTTAGGACTGATTGAAGAGAGTGATGGTGCGCGTGTGATTTATGTTGAGGGTGTAGACATACCACTTATTGCTGTGAAAAGAGATGGTGGCTACAACTATTTTACAACTGATCTAGCATCACTTTGGTATCGTCTAAATGAAGAAAAACTTGAATGGATTGTATATGTTACAGATATTGGGCAGCAACAGCACTTTGATATGCTATTTAAGGCCTATAGGCGTGCAGGTTGGTTACCAAAGGATGAGAATGCGTATCCAAAATGTACTCATATAGGTTTTGGTCTTGTTCTTGGGGAAGATGGAAAACGATTTCGGACTCGCAGCAGTGAGGTTGTTCGATTAGTTGATTTACTTGATGAAGCTAAAAGGCGCTGTAAAATTGCCATTCTTGAACGTGATACAACTAAAGATTGGTCTGAGGAGGAGATCGAGAAAACATCCGAGGCAGTTGGTTATGGGGCTGTTAAGTATGCTGATTTGAAGATCAACAGATTAACAAATTACACCTTCAACTTTGATCAGATGCTTAATGACAAGGGGAATACTGCTGTTTATTTGCTGTATGCACATGCTAGGATCTGTTCCATTATCAGGAAATCTGGTAAAGACATAGAAGAAGTAAAGAGAAATGGGAAAATAGTGTTGGATCATGAAGATGAACGTGCATTGGGGCTTCATTTGCTACAATTTCCTGAGGTTTTTGAGGAGGCATGCACCAATTTGTTGCCCAATTTCTTGTGTGAATACCTTTACAATTTGGCAGAAATCTTTACAAAAAAATTTTACGCTAATTGTCAGGTTGTGGGGTCGCCTGAGGAAACCAGTAGACTCTTGCTATGTGAAGCAACGGTGACTGTGATGAGACACTGCTTTTATCTCCTTGGAATTGAACATGTATACAGGCTATGA
Predicted protein sequences of Glyma.10g102900
>Glyma.10g102900.1.p sequence-type=predicted peptide transcript=Glyma.10g102900.1 locus=Glyma.10g102900 ID=Glyma.10g102900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLIDGINSWAPRLPVKRALIDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSHVECVIRRNHVGDWGTQFGMLITYLFEKFPNPDNVSEADIGDLQAFYKASKLRFDSDPEFKLRAQQAVVSLQSGEIKYHKAWQQICEVSRAEFDKVYQCLGIQLEERGESFYNPYIPGVLEKLDNLGLIEESDGARVIYVEGVDIPLIAVKRDGGYNYFTTDLASLWYRLNEEKLEWIVYVTDIGQQQHFDMLFKAYRRAGWLPKDENAYPKCTHIGFGLVLGEDGKRFRTRSSEVVRLVDLLDEAKRRCKIAILERDTTKDWSEEEIEKTSEAVGYGAVKYADLKINRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEEVKRNGKIVLDHEDERALGLHLLQFPEVFEEACTNLLPNFLCEYLYNLAEIFTKKFYANCQVVGSPEETSRLLLCEATVTVMRHCFYLLGIEHVYRL*

>Glyma.10g102900.2.p sequence-type=predicted peptide transcript=Glyma.10g102900.2 locus=Glyma.10g102900 ID=Glyma.10g102900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLIDGINSWAPRLPVKRALIDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSHVECVIRRNHVGDWGTQFGMLITYLFEKFPNPDNVSEADIGDLQGESFYNPYIPGVLEKLDNLGLIEESDGARVIYVEGVDIPLIAVKRDGGYNYFTTDLASLWYRLNEEKLEWIVYVTDIGQQQHFDMLFKAYRRAGWLPKDENAYPKCTHIGFGLVLGEDGKRFRTRSSEVVRLVDLLDEAKRRCKIAILERDTTKDWSEEEIEKTSEAVGYGAVKYADLKINRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEEVKRNGKIVLDHEDERALGLHLLQFPEVFEEACTNLLPNFLCEYLYNLAEIFTKKFYANCQVVGSPEETSRLLLCEATVTVMRHCFYLLGIEHVYRL*






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