Glyma.10g102000

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Report for Sequence Feature Glyma.10g102000

Feature Type:	gene_model
Chromosome:	Gm10
Start:	20010281
stop:	20015409
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g102000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56680.1	AT	Single-stranded nucleic acid binding R3H protein	JGI	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	JGI	N/A	IEA
KOG2953	KOG	mRNA-binding protein Encore	JGI	N/A	IEA
PTHR15672	Panther	CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN	JGI	N/A	IEA
PTHR15672:SF1	Panther		JGI	N/A	IEA

Expression Patterns of Glyma.10g102000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g102000 not represented in the dataset	Glyma.10g102000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.10g102000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g19480	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.10g102000

Limit To All Plant Sequences

>Glyma.10g102000.2 sequence-type=transcript locus=Glyma.10g102000 ID=Glyma.10g102000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTACATCCGCGTCATGACTCCATCACCCACCCAACCCTAGTGACGGGGAATTGGAGATGTTCCCGTCTGACTCTATATCGGTCCTTTTGACACGGAAGATCATTCAAGAGTACCTATCCCTATATGTTCTCCCGAGTCTCCCTCTAATACTTTCTCTTCTCTTTCTCTCCTAATTGGTCGAGAGAGAAAAAGAGATAGGTAGAGAAAAACGAAGAGTCTCTCTCTTCTTTATGTCAGGGCACAAATCTTTCACCTCTTCTTCTTTCTTCTGACCCATTTCAGAAGGAACCACCAAAAAATAGAGGCAGAAGGTTCTAGAAGCCGCCAAttcttttttttttttttttGGTTTAATCTGTCTGAGTCCGAGAGGTTTGTGATTGTAACAATGGATTCCTCGTGTGTCCCAAACGGTGATGTTTCCGGGTTCAAAGATAAGGAGCCAATGGTTGACCCTTTCTTGGTCGAGGCTCTTCAGAACCCTCGTCACCGTGTCACCATTTTGCGGATGGAGCTGGATATCCAGAGGTTCCTGAATAATGCAGACCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCATATCTCAGACTGGCTGCACATCGTGTTGCTCAACACTATGGTATGCAAACAATGGTTCAAGATAATGGCTTCAATGGCCAGGGAACCAGAATTATGGTAAGAAAGATAGCAGAAAGCAGGTATCCTGTGGTTTGCTTATCTGAAATACCTGCTAAACAGTTGGAAGATGATAAACCTGAGCAGATAAAAATTGCCATAAGGCCCAGGCAAAATAAAAACAGTTTAAATGAAGCCGGAAGGAAAAGCAATCCTCTTAGAAGCGTGGAAGAGAGAAAGGAGGAATATGATCGGGCACGAGCACGCATTTTTAGTAGCTCCAGAAGTTGTGACTCAGATGATACTCTGTCCCAGACTTTTACAGATGAGAAAAATTCTCTTATAATCAAGGATGAGAATGAAACTAGCAAGACCCCTGTGGTTGATTCAGAACAATGCACTGTTGGCAGGGATATTAGTTCTACTCGAGTTGCCATTTTGAGAGATAGGGAAAAGGACCGTAGTGATCCAGATTATGATCGTAACTATGGAAGGTTTGTTCTATCACTGCACTGTGTTATTTGTTCGAGAGTTGTCTGGGTGTCACTGTTTGATGTGTATTCTTAGAAATTTTTTAAACATTTTACTATAATAATTGATAAAAT

Coding sequences of Glyma.10g102000

Limit To All Plant Sequences

>Glyma.10g102000.1 sequence-type=CDS polypeptide=Glyma.10g102000.1.p locus=Glyma.10g102000 ID=Glyma.10g102000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCCTCGTGTGTCCCAAACGGTGATGTTTCCGGGTTCAAAGATAAGGAGCCAATGGTTGACCCTTTCTTGGTCGAGGCTCTTCAGAACCCTCGTCACCGTGTCACCATTTTGCGGATGGAGCTGGATATCCAGAGGTTCCTGAATAATGCAGACCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCATATCTCAGACTGGCTGCACATCGTGTTGCTCAACACTATGGTATGCAAACAATGGTTCAAGATAATGGCTTCAATGGCCAGGGAACCAGAATTATGGTAAGAAAGATAGCAGAAAGCAGGTATCCTGTGGTTTGCTTATCTGAAATACCTGCTAAACAGTTGGAAGATGATAAACCTGAGCAGATAAAAATTGCCATAAGGCCCAGGCAAAATAAAAACAGTTTAAATGAAGCCGGAAGGAAAAGCAATCCTCTTAGAAGCGTGGAAGAGAGAAAGGAGGAATATGATCGGGCACGAGCACGCATTTTTAGTAGCTCCAGAAGTTGTGACTCAGATGATACTCTGTCCCAGACTTTTACAGATGAGAAAAATTCTCTTATAATCAAGGATGAGAATGAAACTAGCAAGACCCCTGTGGTTGATTCAGAACAATGCACTGTTGGCAGGGATATTAGTTCTACTCGAGTTGCCATTTTGAGAGATAGGGAAAAGGACCGTAGTGATCCAGATTATGATCGTAACTATGGAAGATATGCTAGGAGTATTCCAATTTCTTCCCTTAACTTGATGCCTTTTAATTTGCAACAAGTTCAACCTCCATTTGTGCAGTATGACAATGCTTTTAATCCGTTCAGTCAGATATCACAAAATCAAGCTTCACTTGGCTATGGACCTCCTCCAAGCCCTATGATGAATCCTTTTGGTGTCACGGGGTCAAATCAGGTGTCTAGGGATGGTGCTTATGTACAGTGGCCAAGTGCTGCAATGATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTTCCAGGCTCCGATTGCTCAACGCCCATTGAGTTTCGATTATTCACAGAATTACTAG

>Glyma.10g102000.2 sequence-type=CDS polypeptide=Glyma.10g102000.2.p locus=Glyma.10g102000 ID=Glyma.10g102000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCCTCGTGTGTCCCAAACGGTGATGTTTCCGGGTTCAAAGATAAGGAGCCAATGGTTGACCCTTTCTTGGTCGAGGCTCTTCAGAACCCTCGTCACCGTGTCACCATTTTGCGGATGGAGCTGGATATCCAGAGGTTCCTGAATAATGCAGACCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCATATCTCAGACTGGCTGCACATCGTGTTGCTCAACACTATGGTATGCAAACAATGGTTCAAGATAATGGCTTCAATGGCCAGGGAACCAGAATTATGGTAAGAAAGATAGCAGAAAGCAGGTATCCTGTGGTTTGCTTATCTGAAATACCTGCTAAACAGTTGGAAGATGATAAACCTGAGCAGATAAAAATTGCCATAAGGCCCAGGCAAAATAAAAACAGTTTAAATGAAGCCGGAAGGAAAAGCAATCCTCTTAGAAGCGTGGAAGAGAGAAAGGAGGAATATGATCGGGCACGAGCACGCATTTTTAGTAGCTCCAGAAGTTGTGACTCAGATGATACTCTGTCCCAGACTTTTACAGATGAGAAAAATTCTCTTATAATCAAGGATGAGAATGAAACTAGCAAGACCCCTGTGGTTGATTCAGAACAATGCACTGTTGGCAGGGATATTAGTTCTACTCGAGTTGCCATTTTGAGAGATAGGGAAAAGGACCGTAGTGATCCAGATTATGATCGTAACTATGGAAGGTTTGTTCTATCACTGCACTGTGTTATTTGTTCGAGAGTTGTCTGGGTGTCACTGTTTGATGTGTATTCTTAG

Predicted protein sequences of Glyma.10g102000

Limit To All Plant Sequences

>Glyma.10g102000.1.p sequence-type=predicted peptide transcript=Glyma.10g102000.1 locus=Glyma.10g102000 ID=Glyma.10g102000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSSCVPNGDVSGFKDKEPMVDPFLVEALQNPRHRVTILRMELDIQRFLNNADQQHFEFQHFPSSYLRLAAHRVAQHYGMQTMVQDNGFNGQGTRIMVRKIAESRYPVVCLSEIPAKQLEDDKPEQIKIAIRPRQNKNSLNEAGRKSNPLRSVEERKEEYDRARARIFSSSRSCDSDDTLSQTFTDEKNSLIIKDENETSKTPVVDSEQCTVGRDISSTRVAILRDREKDRSDPDYDRNYGRYARSIPISSLNLMPFNLQQVQPPFVQYDNAFNPFSQISQNQASLGYGPPPSPMMNPFGVTGSNQVSRDGAYVQWPSAAMMYAHSYDQFRHAVFQAPIAQRPLSFDYSQNY*

>Glyma.10g102000.2.p sequence-type=predicted peptide transcript=Glyma.10g102000.2 locus=Glyma.10g102000 ID=Glyma.10g102000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSSCVPNGDVSGFKDKEPMVDPFLVEALQNPRHRVTILRMELDIQRFLNNADQQHFEFQHFPSSYLRLAAHRVAQHYGMQTMVQDNGFNGQGTRIMVRKIAESRYPVVCLSEIPAKQLEDDKPEQIKIAIRPRQNKNSLNEAGRKSNPLRSVEERKEEYDRARARIFSSSRSCDSDDTLSQTFTDEKNSLIIKDENETSKTPVVDSEQCTVGRDISSTRVAILRDREKDRSDPDYDRNYGRFVLSLHCVICSRVVWVSLFDVYS*

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