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Report for Sequence Feature Glyma.10g094900

Feature Type:gene_model
Chromosome:Gm10
Start:13582648
stop:13589241
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g094900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57680.1AT Peptidase S41 family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0004175GO-mf endopeptidase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008236GO-mf serine-type peptidase activity EnsemblGenomesN/AIEA
GO:0008236GO-mf serine-type peptidase activity JGI N/AIEA
PTHR22939Panther SERINE PROTEASE FAMILY S1C HTRA-RELATED JGI N/AIEA
PTHR22939:SF50Panther JGI N/AIEA
PF00595PFAM PDZ domain (Also known as DHR or GLGF) JGI N/AIEA
PF03572PFAM Peptidase family S41 JGI N/AIEA

Expression Patterns of Glyma.10g094900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g094900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g12410 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g094900
>Glyma.10g094900.1 sequence-type=CDS polypeptide=Glyma.10g094900.1.p locus=Glyma.10g094900 ID=Glyma.10g094900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAATCTTTGTCAGAATTTTGATGTTAGAGCCACGATTCCGGTTAAAATAGGAAAAAAATCGACTTGGGATGTTTTGTTTCCTCGTAGGTTGTGGTTGCCGACGTGGACGTGTGATCAGAGGAAGGAGGGGAAGTTGAACTTAAAGGTGCAGTGCGGTACTAGGAAAGAAGGGTGGGTTGAATCTGCGGGAAAAAGCGCGTTTGGGTTTGGCGTTTCGGCCGCGGTTTTGTTCTCTGTGTTCTGCTACTCGCCCGCGGCGCTTGCAGAGTCCCTCACCGTTGCTTTTCCCGTGTCTCGGGCGCCTGAGGTAAATGCAGTTCAAAGAACTCTTGTGGAAGCATGGGGTTTAATTCGAGAAACATTTGTTGATCCTACATTTAATCATCAAGATTGGGATTTGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCCCTGAACTCAGCTGATGCAGCATACACAAAACTCCGTGGAATGCTTTCTACCCTTGGAGATCCTTTCACTCGAATTATCAGCCCAAAGGAATACCAAGGGTTTAAAATTGGAAGTGATGGGAACGTACAAGGAGTGGGATTGTTCATAAATGTTGAACCAAGAACAGGACATTTGGTTGTCTTGTCATGTGTAGATGGCAGTCCAGCTGCTCGTGCTGGTATACATCAAGGGGATGAATTGATTGAGATAAATGGTGAGAGGCTTGATGGCATTGATAGTGAAACTGCAGCACAAAGGCTTAGAGGGAATGCTGGAACAACTGTTACAGTAAAGGTCAAAGACTCAGGAACAAGATCTTTTATCCGAGAGGTCAAACTTCCTAGGGAGTATATTAAGCTCTCTCCAATATCAAGTGCCATCATCCCTCATAGATCCCCAGATGGTCATTTCACAAAAACTGGCTATGTGAAATTGTCAGCCTTCTCTCAGACTGCTGCTGAAGACATGAGGAATGCCATTCAGGAATTGGAAAATCAAGGAGTACACTCGTACATATTAGATCTACGGAACAATCCTGGTGGTTTGGTAAAAGCCGGCCTTGATGTTGCACAGATGTGGTTAGATGGAAATGAGACTCTAGTGAACACAATCGATAGAGATGGGAACATGCTACCCATTAATATGGTCGATGGACATGCTATAACACATGATCCACTTGTGGTGATTGTCAATGAGGGAAGCGCAAGTGCCAGTGAGATTTTAGCCGGGGCATTACATGATAACGGTCGAGCTATTCTTGTGGGGCACAAAACATTTGGTAAAGGAAAGATTCAGAGTGTCACTCAGCTTCATGATGGGTCAGCACTCTTTGTTACAGTGGCAAAATATCTATCACCAGCCCTTCATGACATAGATCAGGTTGGGATAACACCAGATGTGCAATGCACAACAGAAATGCTCAATTCAACCAAGGATATTTCAAATTCAACCAAAGACAAGGCCTCAGTCTCATCTCTGGAAGCAGATTCATGCATAATGGTAGCAGAACATGAGTTGGATTTGGAGGAGTCCATGGGAACTGCTTCTTGA
Predicted protein sequences of Glyma.10g094900
>Glyma.10g094900.1.p sequence-type=predicted peptide transcript=Glyma.10g094900.1 locus=Glyma.10g094900 ID=Glyma.10g094900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKNLCQNFDVRATIPVKIGKKSTWDVLFPRRLWLPTWTCDQRKEGKLNLKVQCGTRKEGWVESAGKSAFGFGVSAAVLFSVFCYSPAALAESLTVAFPVSRAPEVNAVQRTLVEAWGLIRETFVDPTFNHQDWDLKLQQTMVEMFPLNSADAAYTKLRGMLSTLGDPFTRIISPKEYQGFKIGSDGNVQGVGLFINVEPRTGHLVVLSCVDGSPAARAGIHQGDELIEINGERLDGIDSETAAQRLRGNAGTTVTVKVKDSGTRSFIREVKLPREYIKLSPISSAIIPHRSPDGHFTKTGYVKLSAFSQTAAEDMRNAIQELENQGVHSYILDLRNNPGGLVKAGLDVAQMWLDGNETLVNTIDRDGNMLPINMVDGHAITHDPLVVIVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTQLHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTTEMLNSTKDISNSTKDKASVSSLEADSCIMVAEHELDLEESMGTAS*






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