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Report for Sequence Feature Glyma.10g078400

Feature Type:gene_model
Chromosome:Gm10
Start:8797711
stop:8801305
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g078400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06290.1AT 2-cysteine peroxiredoxin B JGI N/AIEA
GO:0045454GO-bp cell redox homeostasis EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0098869GO-bp cellular oxidant detoxification EnsemblGenomesN/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
GO:0016209GO-mf antioxidant activity EnsemblGenomesN/AIEA
GO:0016209GO-mf antioxidant activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0051920GO-mf peroxiredoxin activity EnsemblGenomesN/AIEA
GO:0051920GO-mf peroxiredoxin activity JGI N/AIEA
KOG0852 KOG Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes JGI N/AIEA
PTHR10681Panther THIOREDOXIN PEROXIDASE JGI N/AIEA
PF00578PFAM AhpC/TSA family JGI N/AIEA
PF10417PFAM C-terminal domain of 1-Cys peroxiredoxin JGI N/AIEA
GN7V-46336SoyCyc9-rxn peroxiredoxin Plant Metabolic Network ISS

Expression Patterns of Glyma.10g078400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g078400
ParalogEvidenceComments
Glyma.02g198400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g078400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g09470 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g078400
>Glyma.10g078400.2 sequence-type=transcript locus=Glyma.10g078400 ID=Glyma.10g078400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGGCGCGTTTCCTAATGTGTCCTAAGGCGCGTTTACTGTGAACCAACCCCGTTTCCGAGCCTCGTGGTTTCTCTCTCCTCTCTACTGTTACTACTTGGACTTCATCTTATaacctcacccaacccaatcctattccaatcccaatcccatttcaaccTCTCTTTCTTTTCTTCTCGCAGAGCGAAATCCCAATCCCACACAAATGGCATGCTCAGCCACCTCTGCTTCTCTCTTCTCCGCAAACCCCACACCTCTCTTCTCTCCCAAATCCTCCCTCTCCCTCCCTAACAACTCTCTCCACCTCAACCCTCTCCCCACGCGCCCTTCTCTCTCCCTCACGCGCCCCTCGCACACTCGCCGCTCCTTCGTCGTCAAAGCCTCCTCCAGCGAGCTTCCGCTAGTTGGAAACACCGCACCGGATTTCGAAGCAGAGGCTGTGTTTGACCAGGAGTTTATCAACGTGAAACTATCTGATTACATTGGGAAGAAATATGTTGTGCTCTTCTTCTACCCGTTGGACTTCACTTTTGTTTGTCCCACAGAAATCACTGCTTTCAGTGACCGGCATGCAGAGTTCGAGGCACTAAATACTGAGATATTGGGTGTTTCAGTTGACAGTGTGTTCTCGCACCTTGCATGGATCCAAACAGATAGAAAGTCAGGTGGCCTTGGTGACTTGAATTATCCTTTGATTTCTGATGTCACCAAATCCATATCGAAATCTTATGGTGTTCTCATTCCTGATCAGGGAATTGCATTGAGAGGTTTGTTCATTATTGACAAGGAAGGGGTTATTCAGCATTCTACCATTAACAACTTGGCAATTGGTAGAAGTGTTGACGAGACAAAGAGAACTCTCCAGGTAATTACACACTCAATTAGCAGTTAGGATAAGATCAAGATTGAACAAATGATCAGAATATCACATTTTATTTTTCTGTTTTTCCTTTCTATAATATTCATAGTTTCATTACCCCCTTTATGTGCATTGGTCTTGCAGGCCTTACAGTATGTGCAGGAGAACCCAGATGAAGTTTGCCCTGCTGGGTGGAAGCCTGGGGAGAAGTCCATGAAACCAGACCCTAAACTTAGCAAAGACTACTTTGCAGCGGTGTAGCTAGGATACTAGATAGTTAAGAGTGGCTATCTGCATCTGTATCAGTCAGTGTGAATTGCAAAAGGGTCTTGTTTCTTAATGTTTTGTAAGTCCTTAAATTTTGAGCCGCAGGGTATGGGAATATACTAATAAATGCATGCTGGATTTTGAAGTGTACTATGTATTAATTTGCAATTTATTTTGATTATGATCTCTGTTTCGTGTTCATATATGAGCCATATCTTTTGCCAAGTCTGGAGTT
Coding sequences of Glyma.10g078400
>Glyma.10g078400.1 sequence-type=CDS polypeptide=Glyma.10g078400.1.p locus=Glyma.10g078400 ID=Glyma.10g078400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATGCTCAGCCACCTCTGCTTCTCTCTTCTCCGCAAACCCCACACCTCTCTTCTCTCCCAAATCCTCCCTCTCCCTCCCTAACAACTCTCTCCACCTCAACCCTCTCCCCACGCGCCCTTCTCTCTCCCTCACGCGCCCCTCGCACACTCGCCGCTCCTTCGTCGTCAAAGCCTCCTCCAGCGAGCTTCCGCTAGTTGGAAACACCGCACCGGATTTCGAAGCAGAGGCTGTGTTTGACCAGGAGTTTATCAACGTGAAACTATCTGATTACATTGGGAAGAAATATGTTGTGCTCTTCTTCTACCCGTTGGACTTCACTTTTGTTTGTCCCACAGAAATCACTGCTTTCAGTGACCGGCATGCAGAGTTCGAGGCACTAAATACTGAGATATTGGGTGTTTCAGTTGACAGTGTGTTCTCGCACCTTGCATGGATCCAAACAGATAGAAAGTCAGGTGGCCTTGGTGACTTGAATTATCCTTTGATTTCTGATGTCACCAAATCCATATCGAAATCTTATGGTGTTCTCATTCCTGATCAGGGAATTGCATTGAGAGGTTTGTTCATTATTGACAAGGAAGGGGTTATTCAGCATTCTACCATTAACAACTTGGCAATTGGTAGAAGTGTTGACGAGACAAAGAGAACTCTCCAGGCCTTACAGTATGTGCAGGAGAACCCAGATGAAGTTTGCCCTGCTGGGTGGAAGCCTGGGGAGAAGTCCATGAAACCAGACCCTAAACTTAGCAAAGACTACTTTGCAGCGGTGTAG

>Glyma.10g078400.2 sequence-type=CDS polypeptide=Glyma.10g078400.2.p locus=Glyma.10g078400 ID=Glyma.10g078400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATGCTCAGCCACCTCTGCTTCTCTCTTCTCCGCAAACCCCACACCTCTCTTCTCTCCCAAATCCTCCCTCTCCCTCCCTAACAACTCTCTCCACCTCAACCCTCTCCCCACGCGCCCTTCTCTCTCCCTCACGCGCCCCTCGCACACTCGCCGCTCCTTCGTCGTCAAAGCCTCCTCCAGCGAGCTTCCGCTAGTTGGAAACACCGCACCGGATTTCGAAGCAGAGGCTGTGTTTGACCAGGAGTTTATCAACGTGAAACTATCTGATTACATTGGGAAGAAATATGTTGTGCTCTTCTTCTACCCGTTGGACTTCACTTTTGTTTGTCCCACAGAAATCACTGCTTTCAGTGACCGGCATGCAGAGTTCGAGGCACTAAATACTGAGATATTGGGTGTTTCAGTTGACAGTGTGTTCTCGCACCTTGCATGGATCCAAACAGATAGAAAGTCAGGTGGCCTTGGTGACTTGAATTATCCTTTGATTTCTGATGTCACCAAATCCATATCGAAATCTTATGGTGTTCTCATTCCTGATCAGGGAATTGCATTGAGAGGTTTGTTCATTATTGACAAGGAAGGGGTTATTCAGCATTCTACCATTAACAACTTGGCAATTGGTAGAAGTGTTGACGAGACAAAGAGAACTCTCCAGGTAATTACACACTCAATTAGCAGTTAG
Predicted protein sequences of Glyma.10g078400
>Glyma.10g078400.1.p sequence-type=predicted peptide transcript=Glyma.10g078400.1 locus=Glyma.10g078400 ID=Glyma.10g078400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MACSATSASLFSANPTPLFSPKSSLSLPNNSLHLNPLPTRPSLSLTRPSHTRRSFVVKASSSELPLVGNTAPDFEAEAVFDQEFINVKLSDYIGKKYVVLFFYPLDFTFVCPTEITAFSDRHAEFEALNTEILGVSVDSVFSHLAWIQTDRKSGGLGDLNYPLISDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAV*

>Glyma.10g078400.2.p sequence-type=predicted peptide transcript=Glyma.10g078400.2 locus=Glyma.10g078400 ID=Glyma.10g078400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MACSATSASLFSANPTPLFSPKSSLSLPNNSLHLNPLPTRPSLSLTRPSHTRRSFVVKASSSELPLVGNTAPDFEAEAVFDQEFINVKLSDYIGKKYVVLFFYPLDFTFVCPTEITAFSDRHAEFEALNTEILGVSVDSVFSHLAWIQTDRKSGGLGDLNYPLISDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQVITHSISS*






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